DR403418

Overview
NameDR403418
Unique NameDR403418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig672 contig Csv1_Contig672:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAAD----SQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +   Y GG+++  DS+++ G YVA+R+  K+ ++T  +    +G AAD     + +    R +  ++   +   A  K+ AN+V    Y+ K + L  G ++ GWDK  G ++Y V   GT +            Y YG  D  +K  M  EEA +L  +AV
Sbjct:   62 GTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIV----YSYKGYGLSMGTMITGWDK-TGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAV 222          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 42/164 (25.61%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF---LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +G+T   GVV   + R S G  +A++A+DKI ++ +++    +GS AD+Q++  Y++     + ++  +  +++ AA L   + ++++ +   +QT  ++GG D+  G KIY +   G +I   F          YG  +  + + +  +EA  + ++A+
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQT--LLGGVDE-NGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAI 169          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + YN +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  MT EEA +L  +A+
Sbjct:   55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSV-GSGSPYAYGVLDNGYKYDMTVEEASELARRAI 215          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 41/163 (25.15%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  128 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            S GTTI+GV +N GVV+ AD+R++ G  VA++   K+ +++  ++   +G+AAD++ V+  +   +  H++   +   V  A  +++   +  +  +   +IV G D   G  ++ +   G+     +              +  WK+ +TKEEA +L   A+
Sbjct:   27 STGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 188          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.073e-12
Identity = 43/163 (26.38%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +G+  +  V+L  D R S G  VA++ + K+ ++ D + +  +GS  D+Q +   +      + ++ G+       A L+  + ++++ F   T +I+GG+D  EG K++ + PLGG   E+ F          YG  +  +   M+ EE  +L + A+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNAL 168          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 42/163 (25.77%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 619
            GTT +   +  GV++  DSR + G Y+++   +K+ ++  ++    SG AAD Q     +      + ++ G+  +V  A+ L+  + Y  +   L  G ++ GWDK +G  +Y V   GT +            Y YG  D  ++  ++ EEA +L  +A++
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDK-KGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAIT 233          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 45/163 (27.61%), Postives = 76/163 (46.63%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV--RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +   +  GV++  DSR S G Y+A    +K+ ++   +    SG AAD Q     +      + ++ G+  +V  A+ L+   +L Y     L  G ++ GWDK +G  +Y V   GT +            Y YG  D  +++ ++ EEA  L  +A+
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMG-LSMGSMICGWDK-KGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAI 232          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 40/183 (21.86%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   74 ECFRGKMDLKMEDFNAPH--SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            E ++  + L+ + F  P   S GTTI+GV     +VLGAD+R + G  +A++   K+  ++ N++   +G+AAD++ V+  +   +  H++   +   V  A  +++   +  +  +   +++GG+D  +G  ++ +   G+  + P+              +  ++  + + EA +LV +A+
Sbjct:   13 EYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAI 194          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 43/164 (26.22%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTG-MIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVSL 622
            GTT +G+    GVVL AD+R S G  +  +   KI ++ +++ +  +G   D   +   ++   + +   +G+  +VK  A L+  +   +K F   G  +VGG+D  E  +++ V + G I E  +A       + Y   D  ++E M+  +  +L VKA+++
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYD--EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINV 171          
BLAST of DR403418 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 44/162 (27.16%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  134 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAV 616
            GTT +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + Y+ +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  M+ EEA +L  +++
Sbjct:   57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKFDMSVEEASELARRSI 217          
The following BLAST results are available for this feature:
BLAST of DR403418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB5_DICDI1.598e-1230.12Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSMB_METTH2.726e-1225.61Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB5_SPIOL2.726e-1229.01Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB7_YEAST3.560e-1225.15Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSMB_METJA6.073e-1226.38Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB8_CANFA3.014e-1125.77Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB8_RAT5.141e-1127.61Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB7_SCHPO5.141e-1121.86Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSMB_PYRFU6.715e-1126.22Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSB5B_ARATH8.770e-1127.16Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403418 ID=DR403418; Name=DR403418; organism=Citrus sinensis; type=EST; length=624bp
GGGGACAAGAAGCAAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAG
GGCATTTAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTG
AAGATGGAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGG
CGTCACTTACAACGGCGGCGTTGTCCTCGGCGCCGATTCTCGTACTAGCA
CCGGGGTGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACT
GATAATGTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGT
CTCCGACTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGC
AGCCTGCAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTAC
AATAACAAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAA
GTATGAAGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTG
AGCAGCCTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTT
TTTGATCAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAGCAATT
AGTGGTTAAAGCAGTTTCTCTTGC
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