DR403404

Overview
NameDR403404
Unique NameDR403404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_PHOPR (S-adenosylmethionine synthetase OS=Photobacterium profundum GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.635e-49
Identity = 100/205 (48.78%), Postives = 136/205 (66.34%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R  +VRKN T PWLRPD K+QVT  Y  + G +V   +  V++STQH + +    + E + E +IKPV+PA +L + T F +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK++VA+GLA RC +Q+SYAIGV +P S+ ++T+GT K+S   I+  +++NF
Sbjct:  134 LMPAPVTYAHRLVQRQAKVRKNGTLPWLRPDAKSQVTFAY--DQGKIVG--IDAVVLSTQHSDCIDLPVLQEAVMEEIIKPVLPAEWLTKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLASRCEIQLSYAIGVADPTSIMIETFGTEKVSHDIIVDAVRQNF 334          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.635e-49
Identity = 100/205 (48.78%), Postives = 135/205 (65.85%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R  EVR N   PWLRPD K+QVT+ Y +      P  V TV++STQH   +T+ Q+ E + E +IKPV+P  ++   T + +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK++VA+GLA RC +QVSYAIGV EP S+ V+T+GTG++  + +  +++E+F
Sbjct:  134 LMPAPITYAHRLVQRQAEVRCNGQLPWLRPDAKSQVTLRYVDGR----PVAVDTVVLSTQHAPDLTQAQVHEAVIEEIIKPVLPEQWITGETRYLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYACRYVAKNIVAAGLAERCEIQVSYAIGVAEPTSISVETFGTGRVDSEKLTRIVREHF 334          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_XANCB (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.135e-49
Identity = 103/206 (50.00%), Postives = 139/206 (67.48%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRK--NKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MP  + L+ +L  +  ++RK  N    WLRPD K+QVT+ Y +     V   +  V++STQHD  V ++ + E ++E ++KPV+PA +L + T FH+NP+G+FVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK+VVA+GLA RC VQVSYAIGV EP S+ V T+GTGKI+D+ I  LI+++F
Sbjct:  135 MPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDG----VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADELIEKLIRKHF 336          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_XANC8 (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.135e-49
Identity = 103/206 (50.00%), Postives = 139/206 (67.48%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRK--NKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MP  + L+ +L  +  ++RK  N    WLRPD K+QVT+ Y +     V   +  V++STQHD  V ++ + E ++E ++KPV+PA +L + T FH+NP+G+FVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK+VVA+GLA RC VQVSYAIGV EP S+ V T+GTGKI+D+ I  LI+++F
Sbjct:  135 MPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDG----VATAIDAVVLSTQHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADELIEKLIRKHF 336          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_LEUMM (S-adenosylmethionine synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=metK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.135e-49
Identity = 98/204 (48.04%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            +PLTL L+ +L  ++ + R+N+  P+LRPD K +VTVE  +       +R+  V++STQHD+ VT EQ+  D+++HVI  V+P   +DE TI+++NPSGRFV+GGP  D+GLTGRKII+DTY             KD+TKVDRSAAY  R  AK++VA+G+A +  +QVSYAIGV  P+S+ VD++GT K+S++ I  +I + F
Sbjct:  136 LPLTLALSHRLMRKIRDARENEILPYLRPDAKGEVTVELDDNDKV---KRIAAVVLSTQHDDEVTLEQLRADIRKHVIDEVLPQDLVDEDTIYYINPSGRFVLGGPQADSGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSAAYYARYVAKNMVAAGVADKLELQVSYAIGVARPVSLNVDSFGTAKVSEEKINEIITKLF 336          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.789e-49
Identity = 100/206 (48.54%), Postives = 138/206 (66.99%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRK--NKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MP  + ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y +     V   +  V++STQHD  + ++ + E ++E ++KPV+P+ +L + T FH+NP+G+FVIGGP GD GLTGRKII+DTY             KD +KVDRSA+Y VR  AK+VVA+GLA RC VQVSYAIGV EP+S+ V T+GTGKI D  I  LI ++F
Sbjct:  135 MPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGSARHGGGAFSGKDPSKVDRSASYAVRYVAKNVVAAGLADRCEVQVSYAIGVAEPISISVTTFGTGKIPDDKIEKLICQHF 336          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.789e-49
Identity = 100/206 (48.54%), Postives = 138/206 (66.99%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRK--NKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MP  + ++ +L  +  ++RK  N   PWLRPD K Q+T+ Y +     V   +  V++STQHD  + ++ + E ++E ++KPV+P+ +L + T FH+NP+G+FVIGGP GD GLTGRKII+DTY             KD +KVDRSA+Y VR  AK+VVA+GLA RC VQVSYAIGV EP+S+ V T+GTGKI D  I  LI ++F
Sbjct:  135 MPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGSARHGGGAFSGKDPSKVDRSASYAVRYVAKNVVAAGLADRCEVQVSYAIGVAEPISISVTTFGTGKIPDDKIEKLICQHF 336          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.642e-49
Identity = 101/205 (49.27%), Postives = 137/205 (66.83%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R  EVRK+K  PWLRPD K+QVT  Y  EG    P  V  V++STQH   V ++ I E + E +I  V+P  +L + T + +NP+G FVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY+ R  AK++VA+GLA RC +QVSYAIGV EP S+ ++T+GTG+I+++ ++ L++E+F
Sbjct:  135 LMPAPITYAHRLVQRQAEVRKHKVLPWLRPDAKSQVTFRYE-EGK---PVAVDAVVLSTQHAPDVAQKDIREAVMEEIIYHVLPREWLHKDTKYFINPTGSFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYMGRYVAKNIVAAGLAERCEIQVSYAIGVAEPTSISIETFGTGRIAEETLVKLVREHF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_MAGSM (S-adenosylmethionine synthetase OS=Magnetococcus sp. (strain MC-1) GN=metK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.642e-49
Identity = 100/205 (48.78%), Postives = 138/205 (67.32%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP+ +  A +L  +  E+RK+    W RPD K+QVTV Y ++     P  V  V+IS+QH   V  + I +++ E VI+ VIPA  L E T + +NP+GRFVIGGP GDAG+TGRKII+DTY             KD +KVDRS+AY+ R  AK++VA+GLA +C +QV+YAIGV +P+SV VDT+GTGK+ D+ I  L+K++F
Sbjct:  138 LMPMPIYYAHRLMEKHAELRKSGELAWARPDAKSQVTVRYVDDK----PVSVEAVVISSQHSPDVDHDTIEKEIIEKVIRAVIPAELLHEGTQYFINPTGRFVIGGPVGDAGVTGRKIIVDTYGGMGSHGGGAFSGKDPSKVDRSSAYMGRYVAKNIVAAGLAEKCEIQVAYAIGVSQPMSVMVDTFGTGKLDDEAITELVKKHF 338          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_BURCH (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain HI2424) GN=metK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.642e-49
Identity = 102/207 (49.28%), Postives = 134/207 (64.73%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + L+ +L  R   +R++    WLRPD K+QVTV Y +      P  + TV++STQH   +    + E + E +IKP +PA  +     F +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK++VA+GLA R L+QVSYAIGV EP SV V+T+GTG++SD  I  L++E+F
Sbjct:  135 PELMPLPIYLSHRLVERQASLRRDGRLQWLRPDAKSQVTVRYVDGK----PDSIDTVVLSTQHAPDIELPALREAVIEEIIKPTLPAELIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHF 337          
The following BLAST results are available for this feature:
BLAST of DR403404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PHOPR1.635e-4948.78S-adenosylmethionine synthetase OS=Photobacterium ... [more]
METK_ALHEH1.635e-4948.78S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]
METK_XANCB2.135e-4950.00S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANC82.135e-4950.00S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_LEUMM2.135e-4948.04S-adenosylmethionine synthetase OS=Leuconostoc mes... [more]
METK_XYLFT2.789e-4948.54S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF22.789e-4948.54S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_METCA3.642e-4949.27S-adenosylmethionine synthetase OS=Methylococcus c... [more]
METK_MAGSM3.642e-4948.78S-adenosylmethionine synthetase OS=Magnetococcus s... [more]
METK_BURCH3.642e-4949.28S-adenosylmethionine synthetase OS=Burkholderia ce... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403404 ID=DR403404; Name=DR403404; organism=Citrus sinensis; type=EST; length=624bp
ACCTGAGCTAATGCCGCTGACTCTCGTTCTTGCCACCAAGCTTGGAGCCA
GACTTACTGAGGTGAGAAAGAATAAGACATGCCCCTGGCTGAGGCCGGAT
GGAAAAACCCAGGTGACTGTTGAGTACCGGAACGAAGGTGGAGCCATGGT
CCCACAGAGGGTCCACACTGTTCTCATTTCAACCCAGCACGATGAAACTG
TCACCAAGGAGCAGATTTCTGAGGACCTGAAGGAGCATGTGATTAAACCA
GTCATTCCGGCACATTTCCTTGATGAAAGGACAATCTTCCACCTCAACCC
CTCTGGTCGTTTTGTCATTGGCGGGCCACATGGGGATGCAGGGCTTACCG
GTAGGAAGATCATCATTGATACTTATGGTGGTTGGGGTGCTCATGGTGGC
GGTGCCTTCTCTGGCAAGGATTCTACAAAGGTCGATCGAAGTGCTGCATA
TATTGTCAGGCAGGCTGCAAAGAGTGTGGTGGCTTCTGGGCTTGCCCGTC
GCTGTCTTGTCCAGGTCTCTTATGCCATTGGTGTGCCAGAACCGCTGTCT
GTGTTTGTGGACACTTATGGTACAGGAAAGATTTCAGATAAGGATATACT
GGCTCTAATTAAGGAGAACTTTGA
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