DR403404

Overview
NameDR403404
Unique NameDR403404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.069e-64
Identity = 122/207 (58.94%), Postives = 153/207 (73.91%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKD-ILALIKENF 622
            E MPLT+VLA KL  R+ ++R++   PWLRPD KTQVTV+Y  + GA++P RVHT++IS QH+E +T E + E LKE VIK V+PA +LDE TI+HL PSGRFVIGGP GDAG+TGRKII+DTY             KD TKVDRSAAY  R  AKS+V +GL RR LVQVSYAIGV EPLS+ + TYGT K +++D +L ++ +NF
Sbjct:  149 ECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERDELLEVVNKNF 355          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.008e-64
Identity = 116/206 (56.31%), Postives = 154/206 (74.76%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MPLT++LA KL AR+ ++R++   PWLRPD KTQVTV+Y  + GA++P R+HT++IS QH+E +T E++   LKE VI+ V+PA +LDE T++HL PSGRFVIGGP GDAG+TGRKII+DTY             KD TKVDRSAAY  R  AKS+V +GL RR LVQVSYAIGV EPLS+ + TYGT + +++++L ++ +NF
Sbjct:  148 ECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNF 353          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.235e-64
Identity = 118/206 (57.28%), Postives = 153/206 (74.27%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MPLT++LA +L AR+ E+R++   PWL+PD KTQVTV+Y  + GA++P RVHTV+IS QH+E +T E +   LKE VI+ V+PA +LDE TI+HL PSGRFVIGGP GDAG+TGRKII+DTY             KD TKVDRSAAY  R  AKS+V +GL RR LVQVSYAIGV EPLS+ + TYGT + +++++L ++ +NF
Sbjct:  149 ECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVNKNF 354          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.166e-63
Identity = 117/210 (55.71%), Postives = 159/210 (75.71%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGT---GKISDKDILALIKENF 622
            PEL+PLTL+LA +L A + + R++ + PWLRPD KTQVT+EY ++GGA+VP++V TV++S QH E +T E++ +++ E +IK  IPA +LDE T+FH+ PSG F+IGGP GDAGLTGRKII+DTY             KD +KVDRSAAY+ R  AKS+V +GL RRCLVQ+SYAIGV EPLS+FV+ YGT   G+ SD+ ++ +I++NF
Sbjct:  143 PELLPLTLLLAHQLNANMAKARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFHIQPSGLFIIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYLARWIAKSLVTAGLVRRCLVQLSYAIGVAEPLSIFVEDYGTSAEGRTSDQ-LVEIIRKNF 351          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.523e-63
Identity = 118/206 (57.28%), Postives = 153/206 (74.27%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MPLTL+L+ KL  +L E+R++    W+RPD KTQVT+EY +EGGA VP RVHTV+ISTQH   ++ + + ++L E VIK VIPA+ +D++TI+HLNP G F+IGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AKS+V +GL RRCLVQVSYAIGV +PLSV V ++GT  +S++D+L ++ +NF
Sbjct:  136 EAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALSEEDLLTIVNDNF 341          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.598e-63
Identity = 115/207 (55.56%), Postives = 155/207 (74.88%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PEL PLTL+ A KL A ++  R++ + PWLRPD KTQVT+EY+++ GA+VP RV TV++S QH   +T E++ +++ E +IK  IPA +LDE+T++H+ PSG FVIGGP GDAGLTGRKII+DTY             KD +KVDRSAAY+ R  AKS+VA+GLARR LVQ+SYAIGV EPLS++VDTYGT   + ++++ +I+ NF
Sbjct:  146 PELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYHIQPSGLFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFSKVDRSAAYVGRWIAKSLVAAGLARRALVQLSYAIGVAEPLSIYVDTYGTSDKTSEELVQIIRNNF 352          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_BACCN (S-adenosylmethionine synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metK PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.788e-63
Identity = 122/206 (59.22%), Postives = 152/206 (73.79%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMPL + LA KL  RLTEVRK++T  +LRPDGKTQVTVEY   G    P RV T++ISTQH   +T EQI  DLKEHVIK V+PA  +DE T F +NP+GRFVIGGP GDAGLTGRKII+DTY             KD+TKVDRSAAY  R  AK++VA+GLA +  VQ++YAIGV +P+S+ VDT+GTGK+S++ ++ L++ NF
Sbjct:  146 ELMPLPISLAHKLARRLTEVRKDETLEYLRPDGKTQVTVEYDENGK---PVRVDTIVISTQHHPEITWEQIDRDLKEHVIKAVVPAELMDEETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLAEKAEVQLAYAIGVAKPVSISVDTFGTGKVSEEVLVELVRNNF 348          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.289e-62
Identity = 117/206 (56.80%), Postives = 152/206 (73.79%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MPLTL+L+ KL  +L E+R++    W+RPD KTQVT+EY +EGGA VP RVHTV+ISTQH   ++ + + ++L E VIK VIPA+ +D++TI+HLNP G F+IGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AKS+V SGL RRCLVQVSYAIGV +PLSV V ++GT  +++ ++L ++ +NF
Sbjct:  136 EAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALNEGELLKIVNDNF 341          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.199e-62
Identity = 123/207 (59.42%), Postives = 151/207 (72.95%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA KL  RLTEVRK     +LRPDGKTQVTVEY  EG   V  RVHTVLIS QH ETV+ ++I EDL  HVIK VIPA  LDE T  ++NP+GRFVIGGP GD GLTGRKIIIDTY             KD TKVDRSAAY  R  AK++VA+GLA +C ++++YAIG+  PLS+F+DT+GTGK+S++ ++ L+ ++F
Sbjct:  143 PELMPLPISLAHKLSRRLTEVRKTGLVDYLRPDGKTQVTVEY--EGSKAV--RVHTVLISAQHCETVSNDKIREDLINHVIKEVIPAELLDEETKIYINPTGRFVIGGPQGDTGLTGRKIIIDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEIELAYAIGIARPLSIFIDTFGTGKVSEEKLVELVNKHF 345          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_BACP2 (S-adenosylmethionine synthetase OS=Bacillus pumilus (strain SAFR-032) GN=metK PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.199e-62
Identity = 119/206 (57.77%), Postives = 153/206 (74.27%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMPL + LA KL  RLTEVRK++T  +LRPDGKTQVTVEY ++     P R+ TV+ISTQH   VT EQI  DLKEHVI PV+P+  +DE+T + +NP+GRFVIGGP GDAGLTGRKII+DTY             KD+TKVDRSAAY  R  AK++VA+GLA  C VQ++YAIGV +P+S+ +DT+GTGK S++ ++ +++ NF
Sbjct:  146 ELMPLPISLAHKLSLRLTEVRKDQTLAYLRPDGKTQVTVEYDDQNK---PVRIDTVVISTQHAPEVTLEQIQSDLKEHVISPVVPSELIDEQTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADSCEVQLAYAIGVAQPVSISIDTFGTGKASEEKLIEVVRANF 348          
The following BLAST results are available for this feature:
BLAST of DR403404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_RAT3.069e-6458.94S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_HUMAN4.008e-6456.31S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN5.235e-6457.28S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_ASCIM1.166e-6355.71S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK4_CAEEL1.523e-6357.28Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK_NEUCR2.598e-6355.56S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_BACCN5.788e-6359.22S-adenosylmethionine synthetase OS=Bacillus cereus... [more]
METK3_CAEEL1.289e-6256.80Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_CLOD62.199e-6259.42S-adenosylmethionine synthetase OS=Clostridium dif... [more]
METK_BACP22.199e-6257.77S-adenosylmethionine synthetase OS=Bacillus pumilu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403404 ID=DR403404; Name=DR403404; organism=Citrus sinensis; type=EST; length=624bp
ACCTGAGCTAATGCCGCTGACTCTCGTTCTTGCCACCAAGCTTGGAGCCA
GACTTACTGAGGTGAGAAAGAATAAGACATGCCCCTGGCTGAGGCCGGAT
GGAAAAACCCAGGTGACTGTTGAGTACCGGAACGAAGGTGGAGCCATGGT
CCCACAGAGGGTCCACACTGTTCTCATTTCAACCCAGCACGATGAAACTG
TCACCAAGGAGCAGATTTCTGAGGACCTGAAGGAGCATGTGATTAAACCA
GTCATTCCGGCACATTTCCTTGATGAAAGGACAATCTTCCACCTCAACCC
CTCTGGTCGTTTTGTCATTGGCGGGCCACATGGGGATGCAGGGCTTACCG
GTAGGAAGATCATCATTGATACTTATGGTGGTTGGGGTGCTCATGGTGGC
GGTGCCTTCTCTGGCAAGGATTCTACAAAGGTCGATCGAAGTGCTGCATA
TATTGTCAGGCAGGCTGCAAAGAGTGTGGTGGCTTCTGGGCTTGCCCGTC
GCTGTCTTGTCCAGGTCTCTTATGCCATTGGTGTGCCAGAACCGCTGTCT
GTGTTTGTGGACACTTATGGTACAGGAAAGATTTCAGATAAGGATATACT
GGCTCTAATTAAGGAGAACTTTGA
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