DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 65/113 (57.52%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI+AS+N+T IH+TDL+G ET+ + +GGM VKADRDESSPYAAM+AA+  ++   E GI  +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   16 WGVAHIYASYNNTIIHITDLTGAETISKWSGGMVVKADRDESSPYAAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PYRKO (30S ribosomal protein S11P OS=Pyrococcus kodakaraensis GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 64/113 (56.64%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E GIT +HIK+RA            AQ+A+RAL+R+G++IGR+EDVTPIP D T
Sbjct:   17 WGVAHIYSSYNNTIIHITDLTGAETISRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGITGVHIKVRAPGGSKSKSPGPGAQAAIRALSRAGLRIGRVEDVTPIPHDGT 129          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PYRFU (30S ribosomal protein S11P OS=Pyrococcus furiosus GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+AHI++SFN+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METMJ (30S ribosomal protein S11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  141 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            E  +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A  V+Q  ++ GIT +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:    3 EEKWGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAIQVAQNARDKGITGVHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+AHI+ASFN+T I +TDL+G ET  R +GGM V ADR+ESSPYAAM AA+  ++   E GITA+H+K+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   14 WGIAHIYASFNNTIITITDLTGAETFARWSGGMVVDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 126          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  135 DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +G+  +GVAHI+ASFN+T I VTDL+G ET+ + +GGM VK DR+ESSPYAAM  A +V+Q  +E GI  LH+K+RA            AQ+A+RALAR+GM+IG IEDVTP+P DS
Sbjct:    3 EGKEKWGVAHIYASFNNTIITVTDLTGAETITKSSGGMVVKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDS 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +GVAHIF+S N+TF+H+TD++G ET  R+TGGM VKAD ++ SPYAAM+AA   +Q+  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+
Sbjct:    7 WGVAHIFSSPNNTFVHITDITGSETASRVTGGMVVKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAMLAA   +Q+  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+T
Sbjct:   10 WGVAHIYSSYNNTIIHITDLTGAETVARTSGGMVVKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTT 122          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_THESM4.092e-3157.5230S ribosomal protein S11P OS=Thermococcus sibiric... [more]
RS11_PYRKO9.117e-3156.6430S ribosomal protein S11P OS=Pyrococcus kodakarae... [more]
RS11_PYRFU1.191e-3056.6430S ribosomal protein S11P OS=Pyrococcus furiosus ... [more]
RS11_METMJ1.191e-3058.2630S ribosomal protein S11P OS=Methanoculleus maris... [more]
RS11_PYRHO2.653e-3055.7530S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRAB2.653e-3055.7530S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_METKA2.653e-3058.4130S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_METHJ4.525e-3056.4130S ribosomal protein S11P OS=Methanospirillum hun... [more]
RS11_IGNH44.525e-3058.0430S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_HYPBU4.525e-3057.5230S ribosomal protein S11P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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