DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS+  KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  123 PAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            P     +   G+AHI++S+N+T IH+TDL+G ET+   +GG+ V ADR ESSP+AAM AA  V +  +  G T  HI++RA            AQ+A+RALAR G +IGRI+DVTPIP D+T
Sbjct:   66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            ++GVAHI  SFN+T I VTDL+G ET+ + +GGM VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    5 IWGVAHIKCSFNNTIITVTDLTGAETIAKSSGGMVVKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+A+++ASFN+T I VTD++G ET+V+ +GG  VK +RDE+SPYAAM  A+ V++  K+ GI  +H+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIANVYASFNNTIITVTDMTGAETIVKSSGGTVVKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +G+A+I+AS N+T I +TDL+G ET+ R++GG  VKADRD+ SPYAAM+AA   +Q     GI A+H+K+R             A +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:    9 WGIAYIYASSNNTMIIITDLTGSETVARVSGGQVVKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +G+A ++AS N+T I +TD++G E + R +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTPIP DS
Sbjct:    9 WGIARVYASQNNTLITITDITGAEIISRASGGMVVKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDS 120          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            G+AHI+AS N+T I VTD +G ET+ + +GGM VK DRDE+SPYAAM AA  VS++ +E  IT L I++RA            AQSA+RAL+R+G KI RIE+VTPIP D T
Sbjct:    5 GIAHIYASQNNTIILVTDPTGAETIAKSSGGMVVKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGT 116          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_THEVO3.035e-2656.2530S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_CENSY3.964e-2648.3630S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]
RS11_METBU5.177e-2651.7530S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_NATPD8.831e-2649.5630S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_METAC1.153e-2551.3330S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_CALMQ1.153e-2552.6830S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_METMA2.569e-2550.4430S ribosomal protein S11P OS=Methanosarcina mazei... [more]
RS11_SULTO3.356e-2552.6830S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_METBF4.383e-2550.4430S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_PICTO7.476e-2555.3630S ribosomal protein S11P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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