DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METNO (30S ribosomal protein S11 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+ H+ +SFN+T + +TD  G       +G M  K  R +S+PYAA +AA+D +++ KE G+  + +++R              +SALRAL  +G+ +  I D TPIP
Sbjct:   19 GIVHVNSSFNNTMVTITDAQGNTISWSSSGVMNFKGSR-KSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRG--------PGSGRESALRALQAAGLTVTAINDTTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SPHWW (30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  + +K+               +SALRAL   G  I  I+DVTPIP
Sbjct:   19 GVAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSR-KSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSG--------PGSGRESALRALQSVGFTITTIQDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL   GMKI  I D+TPIP
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ZYMMO (30S ribosomal protein S11 OS=Zymomonas mobilis GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_XANP2 (30S ribosomal protein S11 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_WIGBR (30S ribosomal protein S11 OS=Wigglesworthia glossinidia brevipalpis GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   99 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            K++N ++       + + G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+  S+  KE GI  L I ++              +S +RAL  SG KI  I DVTPIP
Sbjct:    3 KKQNSSISRKKIKRQILEGIAHIHASFNNTIVTITDRQGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCSEIAKEYGIKNLEIMVKG--------PGPGRESTIRALNSSGFKITNITDVTPIP 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SILST (30S ribosomal protein S11 OS=Silicibacter sp. (strain TM1040) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ ++ G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKTRTKRKERKNIAS---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQDHGVKTLEVEVQG--------PGSGRESALRALAAIGFNITNIRDVTPI 116          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOS5 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D +++ +E G+  + ++++              +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQEHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_METNO4.255e-1239.0930S ribosomal protein S11 OS=Methylobacterium nodu... [more]
RS11_HYPNA4.255e-1235.1930S ribosomal protein S11 OS=Hyphomonas neptunium ... [more]
RS11_SPHWW5.557e-1239.8130S ribosomal protein S11 OS=Sphingomonas wittichi... [more]
RS11_MARMM5.557e-1238.8930S ribosomal protein S11 OS=Maricaulis maris (str... [more]
RS11_AZOSE5.557e-1237.0430S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]
RS11_ZYMMO7.257e-1239.8130S ribosomal protein S11 OS=Zymomonas mobilis GN=... [more]
RS11_XANP27.257e-1238.8930S ribosomal protein S11 OS=Xanthobacter autotrop... [more]
RS11_WIGBR7.257e-1235.7130S ribosomal protein S11 OS=Wigglesworthia glossi... [more]
RS11_SILST7.257e-1234.3330S ribosomal protein S11 OS=Silicibacter sp. (str... [more]
RS11_RHOS57.257e-1233.5830S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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