CX046729

Overview
NameCX046729
Unique NameCX046729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 68/175 (38.86%), Postives = 105/175 (60.00%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVR---KLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAI 565
            +I++LA+P G + QR+AAYF EA++ R++ S  GL+  L +   ++      V    ++F  + PF+K +    NQAI EA E E+ VH+IDL+  +  QW  L   L++RP GPP +R+TG+    E L+    RL++ A+ L +PF+F  V  K  NLD +KL V   EA+A+
Sbjct:  316 EIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAV 490          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 67/175 (38.29%), Postives = 105/175 (60.00%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVR---KLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAI 565
            +I++LA+P G + QR+AAYF EA++ R++ S  GL+  L     ++      V    ++F  + PF+K +    NQAI EA E E+ VH+IDL+  +  QW  L   L++RP GPP +R+TG+    E L+    RL++ A+ L +PF+F +V  K  N+D +KL V   EA+A+
Sbjct:  324 EIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPEKLGVTRREAVAV 498          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 82/255 (32.16%), Postives = 128/255 (50.20%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQK----EVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            I  LA      M+++A YF EALA+RI K +P        +  SS ++ + +   F++  P+LK A    NQAI+EA  G   VHVID +  +  QW AL+QAL+ RP GPP  R+TGI P +    + L Q+  +L + AE + + F+F   V + L +LD   L ++    EA+AI+SV +LH LL+                                        ++  LNS+  ++PK++ + EQ++NH+
Sbjct:  225 IGILAVSQSGAMRKVATYFAEALARRIYKIYP------QDSMESSYTDVLQMH--FYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLLS------------------------------------RPGAIEKVLNSIKQINPKIVTLVEQEANHN 435          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.525e-25
Identity = 63/187 (33.69%), Postives = 103/187 (55.08%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEV------LDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            Q+ Q+ S  G+ +QR+ AY  E L  R+  S   ++KAL   +  +  E +    + ++  P+ K  +   N AI EA++ E  VH+ID   ++  QW++LI+AL  RP GPP++RITGI   +        L+ +  RL + AE   +PF+F+        ++ +KL V+ GEALA++  L LH +
Sbjct:  252 QLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRC-KDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHM 437          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.601e-25
Identity = 75/254 (29.53%), Postives = 126/254 (49.61%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGI--HPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVS-KLENLDFDKLRVKT-GEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHHG 799
            ++  LA+     M ++A YF EALA+RI +  P       S      S E +++  F+D  P+LK A    NQAI+EA+   +VVHVIDL   +  QW AL+QAL+ RP GPP  R+TG+     +E + ++  +L + A+ + + F+FN + + +L +L+ D    +T  E L ++SV +LH +L+                                        ++  L ++  + P ++ V EQ++NH+G
Sbjct:  182 RVGLLAASQAGAMGKVATYFAEALARRIYRIHP-------SAAAIDPSFEEILQMNFYDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGNPSNREGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVFELHPVLS------------------------------------QPGSIEKLLATVKAVKPGLVTVVEQEANHNG 392          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 76/247 (30.77%), Postives = 121/247 (48.99%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSN 790
            ++  + S  G+ +QR+ AY  E L  R+  S   ++K+L S    S  E +    +  ++ P+ K  ++  N AI EAM+ E+ +H+ID    + +QWIALIQA + RP G P++RITG+     VL  +  RL + A+K D+PF+FN+V      ++ + L V+ GEAL ++    LH L   D+  S+                                  D  L  +  LSPKV+ + EQ+ N
Sbjct:   75 ELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESY-EFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGV-GDGSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHL--PDESVSM------------------------------ENHRDRLLRMVKSLSPKVVTLVEQECN 287          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 78/257 (30.35%), Postives = 127/257 (49.42%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHHG 799
            +I  LA      M+++A +F EALA+RI +  P     L+ + +       +++  F++  P+LK A    NQAI+EA EG+K VHVID +  +  QW ALIQAL+ RP GPP  R+TGI P      + L  +  +L + AE L + F++   V + L +LD   L ++    E++ ++SV +LH LLA                                        ++  L+ +  + P+++ V EQ++NH+G
Sbjct:  236 RIDYLAVSQAGAMRKVATFFAEALARRIYRLCP--ENPLDRSVLD------MLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQLLA------------------------------------RPGAIEKVLSVVKQMKPEIVTVVEQEANHNG 448          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.884e-25
Identity = 76/257 (29.57%), Postives = 127/257 (49.42%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHHG 799
            +I  LA      M+++A +F EALA+RI +  P       +    S+S+ + +   F++  P+LK A    NQAI+EA EG+K VHVID +  +  QW AL+QAL+ RP GPP  R+TGI P      + L  +  +L +  E +++ F++   V + L +LD   L ++    E++ ++SV +LH LLA                                        ++  ++ +  + P++M V EQ++NH+G
Sbjct:  243 RIGYLAVSQAGAMRKVATFFAEALARRIYRVCP------ENPLDHSMSDMLQLH--FYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLA------------------------------------RPGAIEKVMSVVKQMKPEIMTVVEQEANHNG 455          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 73/257 (28.40%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNSVVSK-LENLDFDKLRVK-TGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHHGL 802
            ++  LA      M ++A YF +ALA+RI + +        +    + S E ++   F++  P+LK A    NQAI+EA+   + VHVIDL   +  QW AL+QAL+ RP GPP  R+TGI P      + L Q+  +L + A+ + + F+F  + ++ L +L+ +    +   E L ++SV +LH LLA                                        ++  LN++  + P ++ V EQ++NH+G+
Sbjct:  205 RVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAV---NPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARS------------------------------------GSIEKLLNTVKAIKPSIVTVVEQEANHNGI 422          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 78/256 (30.47%), Postives = 128/256 (50.00%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQK----EVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHHG 799
            I  LAS     M+++A YF EALA+RI + +P        +   S ++++ +   F++  P+LK A    NQAI+EA      VHVID    +  QW AL+QAL+ RP GPP  R+TGI P +    + L Q+  +L + AE++ I F+F   V + L +L+ + L ++    E +A+++V +LH LLA                                        ++  ++S+  + PK++ V EQ++NH+G
Sbjct:  197 IGLLASSQTGAMRKVATYFAEALARRIYRIFPP------DSLDPSYNDKLQIP--FYETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPLLA------------------------------------RPGGIEKVVSSIKAMKPKIVTVVEQEANHNG 408          
The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SCR1_ORYSI6.191e-2738.86Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCR_MAIZE1.801e-2638.29Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
GAI_SOLLC4.013e-2632.16DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SCL5_ARATH1.525e-2533.69Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
RGL3_ARATH2.601e-2529.53DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
SCL21_ARATH3.397e-2530.77Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
GAIP_CUCMA4.437e-2530.35DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
GAIPB_CUCMA9.884e-2529.57DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
RGL2_ARATH1.686e-2428.40DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
GAI_GOSHI1.686e-2430.47DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bp
AAATCATGTAGCAAATGGTAATCTTGAAAATGCTAATCTTGCTCTAGACC
AAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCATTGCT
GCCTACTTTACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGGCCTGG
CCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGAAGAAA
TGCTTGTTCGGAAACTGTTTTTTGATATGTTCCCGTTCTTGAAAGTGGCT
TTTGTGCTCACAAATCAAGCTATTATTGAAGCAATGGAAGGGGAAAAGGT
GGTTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTGCAC
TCATTCAAGCTTTGAGTACAAGGCCTGAGGGGCCACCTCATTTGAGAATC
ACGGGGATTCATCCACAGAAGGAGGTGTTGGATCAAATGGCTCATAGATT
GACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTGG
TTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGGT
GAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCGC
TGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAATG
GGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCT
CCAAATGCTTCAGCAAAGATGGACAGCTTTCTTAATTCTCTGTGGGGCTT
GTCACCAAAAGTTATGGTGGTGACAGAACAGGATTCTAATCACCATGGCT
TG
back to top