CX046729

Overview
NameCX046729
Unique NameCX046729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 77/260 (29.62%), Postives = 126/260 (48.46%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNSVV-SKLENLDFDKLRVK------TGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            QI  LAS  G  M+++AAYF EALA+R+ +  P    +L     +      L+   F++  P+LK A    NQAI+EA  G + VHV+D    +  QW AL+QAL+ RP GPP  R+TG+ P    + + L Q+  +L + A  + + FQ+  +V + L +L+   L+ +        E +A++SV +LH LLA                                        ++  L ++  + P+++ V EQ++NH+
Sbjct:  268 QIPMLASSQGGAMRKVAAYFGEALARRVYRFRPPPDSSLLDAAFAD-----LLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGDDTDDEPEVIAVNSVFELHRLLA------------------------------------QPGALEKVLGTVRAVRPRIVTVVEQEANHN 486          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.202e-24
Identity = 74/190 (38.95%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS-SVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFD--KLRVKTGEALAISSVLQLHSLL 595
            QI  LA      M+++A YF EALA+RI +  P        T+I  S+S+ + +   F++  P+LK A    NQAI+EA EG+K VHVID +  +  QW AL+QAL+ R  GPP  R+TGI P      + L ++  +L + AE + + F++   V + L +LD    +LR    EA+A++SV +LH LL
Sbjct:  233 QIGFLAVSQAGAMRKVATYFAEALARRIYRLSPP------QTQIDHSLSDTLQMH--FYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLL 414          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 73/190 (38.42%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS-SVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLL 595
            QI  LA      M+++A YF EALA+RI +  P        T+I  S+S+ + +   F++  P+LK A    NQAI+EA EG+K VHVID +  +  QW AL+QAL+ R  GPP  R+TGI P      + L ++  +L + AE + + F++   V + L +LD   L ++    EA+A++SV +LH LL
Sbjct:  239 QIGFLAVSQAGAMRKVATYFAEALARRIYRLSPP------QTQIDHSLSDTLQMH--FYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLL 420          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 80/256 (31.25%), Postives = 125/256 (48.83%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQK----EVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG--EALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            QI  LA      M+++A YF EALA+RI +  P       S    S+S+ + +   F++  P+LK A    NQAI+EA +G+K VHVID + ++  QW AL+QAL+ RP GPP  R+TGI P      + L ++  +L   AE + + F++   V + L +LD   L ++    E++A++SV +LH LL                                         +D  L  +  + P++  V EQ+SNH+
Sbjct:  194 QIGFLAVSQIGAMRKVATYFAEALARRIYRLSPS-----QSPIDHSLSDTLQMH--FYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLG------------------------------------RPGAIDKVLGVVNQIKPEIFTVVEQESNHN 406          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 75/253 (29.64%), Postives = 122/253 (48.22%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEV------LDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSN 790
            ++ ++ S  G+ ++R+ AY  E L  R+  S   ++KAL      S S+ +      ++  P+ K  ++  N AI EA++GE  +H+ID + ++ AQWI+L+QAL+ RP GPP +RITGI            L+ +  RL+  A    +PF+F+ +      ++   L V  GEALA++  L+LH +   D+  S         AN                        D  L  +  LSPKV+ + E +SN
Sbjct:  199 ELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPKS-SDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHI--PDESVS--------TAN----------------------HRDRLLRMVKSLSPKVLTLVEMESN 418          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24
Identity = 77/261 (29.50%), Postives = 128/261 (49.04%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNSVV-SKLENLDFDKLRV-------KTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            QI  LA+  G  M+++AAYF EALA+R+ +  P      +ST + +   ++L    F++  P+LK A    NQAI+EA  G   VHV+D    +  QW AL+QAL+ RP GPP  R+TG+ P    + + L Q+  +L + A  + + FQ+  +V + L +L+   L+        +  E +A++SV +LH LLA                                        ++  L ++  + P+++ V EQ++NH+
Sbjct:  266 QIPTLAASQGGAMRKVAAYFGEALARRVYRFRPA-----DSTLLDAAFADLL-HAHFYESCPYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRLLA------------------------------------QPGALEKVLGTVHAVRPRIVTVVEQEANHN 484          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24
Identity = 69/202 (34.16%), Postives = 107/202 (52.97%), Query Frame = 2
Query:   62 LASPDGDT-MQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFF--DMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLL------AADDYASLIALKNSL 640
            LASP G T M R+ AY+ EALA R+ + WP +             E+     L F   + P  K      N+ ++ A EG++ VH+ID +  +  QW +  Q+L++R   P H+RITGI   K  L++   RL   AE +++ F+F+ VV +LE++    L VK GE++A++ V+Q+H  L      A  D+  LI   N +
Sbjct:  303 LASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQFEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPI 504          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 75/261 (28.74%), Postives = 126/261 (48.28%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNSVV-SKLENLDFDKLRV-------KTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            QI  LA+  G  M+++AAYF EALA+R+ +  P    +L     +      L+   F++  P+LK A    NQAI+EA  G + VHV+D    +  QW AL+QAL+ RP GPP  R+TG+ P    + + L Q+  +L + A  + + FQ+  +V + L +L+   L+        +  E +A++SV ++H LLA                                        ++  L ++  + P+++ V EQ++NH+
Sbjct:  255 QIPLLAASQGGAMRKVAAYFGEALARRVFRFRPQPDSSLLDAAFAD-----LLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRLLA------------------------------------QPGALEKVLGTVRAVRPRIVTVVEQEANHN 474          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 75/261 (28.74%), Postives = 126/261 (48.28%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNSVV-SKLENLDFDKLRV-------KTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSNHH 796
            QI  LA+  G  M+++AAYF EALA+R+ +  P    +L     +      L+   F++  P+LK A    NQAI+EA  G + VHV+D    +  QW AL+QAL+ RP GPP  R+TG+ P    + + L Q+  +L + A  + + FQ+  +V + L +L+   L+        +  E +A++SV ++H LLA                                        ++  L ++  + P+++ V EQ++NH+
Sbjct:  259 QIPLLAASQGGAMRKVAAYFGEALARRVFRFRPQPDSSLLDAAFAD-----LLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRLLA------------------------------------QPGALEKVLGTVRAVRPRIVTVVEQEANHN 478          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 72/189 (38.10%), Postives = 106/189 (56.08%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFD--KLRVKTGEALAISSVLQLHSLL 595
            QI  LA      M+++A YF EALA+RI +  P         +I     + L +  F++  P+LK A    NQAI+EA EG+K VHVID +  +  QW AL+QAL+ R  GPP  R+TGI P      + L ++  +L + AE + + F++   V + L +LD    +LR    EA+A++SV +LH LL
Sbjct:  246 QIGCLAVSQAGAMRKVATYFAEALARRIYRLSPP------QNQIDHCLSDTL-QMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLL 427          
The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
DWRF8_MAIZE1.686e-2429.62DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
RGA1_BRACM2.202e-2438.95DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGA2_BRACM3.756e-2438.42DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
GAI_ARATH3.756e-2431.25DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
CIGR2_ORYSJ3.756e-2429.64Chitin-inducible gibberellin-responsive protein 2 ... [more]
SLR1_ORYSJ4.905e-2429.50DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
SCL28_ARATH4.905e-2434.16Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SLN1_HORVU1.093e-2328.74DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT1.093e-2328.74DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
RGA_ARATH1.093e-2338.10DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bp
AAATCATGTAGCAAATGGTAATCTTGAAAATGCTAATCTTGCTCTAGACC
AAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCATTGCT
GCCTACTTTACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGGCCTGG
CCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGAAGAAA
TGCTTGTTCGGAAACTGTTTTTTGATATGTTCCCGTTCTTGAAAGTGGCT
TTTGTGCTCACAAATCAAGCTATTATTGAAGCAATGGAAGGGGAAAAGGT
GGTTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTGCAC
TCATTCAAGCTTTGAGTACAAGGCCTGAGGGGCCACCTCATTTGAGAATC
ACGGGGATTCATCCACAGAAGGAGGTGTTGGATCAAATGGCTCATAGATT
GACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTGG
TTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGGT
GAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCGC
TGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAATG
GGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCT
CCAAATGCTTCAGCAAAGATGGACAGCTTTCTTAATTCTCTGTGGGGCTT
GTCACCAAAAGTTATGGTGGTGACAGAACAGGATTCTAATCACCATGGCT
TG
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