CX046729

Overview
NameCX046729
Unique NameCX046729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 61/181 (33.70%), Postives = 98/181 (54.14%), Query Frame = 2
Query:   62 LASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGI------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLH 586
            + S +G+ +QR+ AY  E L  R   S   +++AL      S  E +   ++ +++ P+ K  ++  N AI EA+  E  +H+ID   A+  QWI LIQAL+ RP GPP +RITGI      + + E LD +   L   +E+  IP +F  +      +  + L ++ GEAL+++  LQLH
Sbjct:  230 VVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPES-KELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLH 409          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.023e-21
Identity = 66/189 (34.92%), Postives = 101/189 (53.44%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEG-PPHLRITGI------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLL 595
            QI +  S  GD  +R+A YFTEAL+ R+  + P       S+  SS  + +L  K   D  P+ K A +  NQAI+EA E    +H++D    +  QW AL+QAL+TR  G P  +R++GI         +  L    +RL + A+ LD+ F F  +++ +  L+    RV   E LA++ +LQL+ LL
Sbjct:  241 QIRESVSELGDPTERVAFYFTEALSNRLSPNSPA-----TSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLL 424          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 57/189 (30.16%), Postives = 106/189 (56.08%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALS-TRPEGPPHLRITGIH-PQK-----EVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLL 595
            QI + +SP G+  +R+A YF  +L  R+  +   ++ AL+S + +S ++ +   + +  + PF K A +  N +++        +H+ID   +   QW ALI  LS +RP G P LRITGI  PQ+     E + +  HRL    ++ ++PF++N++  K E +  + L+++ GE + ++S+ +  +LL
Sbjct:  418 QIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKK-TSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLL 605          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.976e-21
Identity = 57/176 (32.39%), Postives = 98/176 (55.68%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSW-PGLHKALNSTRISSVSEEMLVRKL--FFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENL-DFDKLRVKTGEALAI 565
            +IS++ SP G + +R+ AYF +AL  R++ S+  G    L+   ++ V  + +   L  +  + P +K +    NQAI +A++GE  VH+IDL+  +  QW AL   L++RP     +RITG     ++L     RL + A  L++PF+F+ +   + NL D  +L  + GEA+ +
Sbjct:   65 EISEICSPFGSSPERVVAYFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVV 240          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 73/254 (28.74%), Postives = 121/254 (47.64%), Query Frame = 2
Query:   47 DQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEV------LDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSN 790
            +++ Q+ S  GD  QRIAAY  E LA R+  S   +++AL      S  E +   ++ F++ P  K  F+  N AI+EA++GE+ VH+ID +  +  Q++ LI++++  P   P LR+TGI   + V      L  +  RL + AE   + F+F ++ SK   +    L  K GE L ++   QLH +   D+  + +                               + D  L+ +  L+PK++ V EQD N
Sbjct:  246 NELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPS-DERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKAMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHM--PDESVTTV------------------------------NQRDELLHMVKSLNPKLVTVVEQDVN 466          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.630e-21
Identity = 68/197 (34.52%), Postives = 108/197 (54.82%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHK-----ALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITG-IHPQKEVLDQMA-HRLTEE--------AEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +++L+SP GDT Q++A+YF +AL  R+  S    ++     A      S  S    V K F ++ P+     V  N AI+EA++GE  +H++D+++    QW  L++AL+TR +  PHLR+T  +   K V DQ A HR+ +E        A  + +PF+FN +  V  L   D ++L VK  E LAI+ V  +H +
Sbjct:  169 LNELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLK-FQEVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGI 364          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.573e-20
Identity = 58/190 (30.53%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIE--AMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQK-----EVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLL 595
            +I Q +S  GD  +R+A YF  +L  R+      ++ AL+S + +S S+ +   + +  + PF K+A +  N +I+   +    K +H+ID   ++  QW +LI  L+ R      LRITGI  PQ+     E + +   RL +  +K +IPF++N++  K E++  + L++K GE +A++S+ +  +LL
Sbjct:  343 RIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKK-TSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYNAIAQKWESIKLEDLKLKEGEFVAVNSLFRFRNLL 531          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.751e-19
Identity = 63/190 (33.16%), Postives = 101/190 (53.16%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEG-PPHLRITGIHPQKEVLDQ-------MAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLL 595
            +I +  S  GD +QR+  YF EAL+ +  +S        +S+  SS+ + +L  K   D  P+ K A +  NQAI+EA      +H++D    +  QW AL+QAL+TR  G P  +RI+GI P   + D          +RL + A  LD+ F+F  V++ ++ L+    RV   E L ++ +L+L+ LL
Sbjct:  197 RIKESVSESGDPIQRVGYYFAEALSHKETES-------PSSSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGI-PAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLL 378          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 62/205 (30.24%), Postives = 103/205 (50.24%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSW-PGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQ-----KEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLL 643
            +I   +S +GD  QR+A YF EAL  RI  +  P +     S+  S V + +   KLF    P     +   N++I E       +H++D       QW  L++ALS RP GPP LR+TGI  PQ      + +++   RL    ++ ++PF+FN +  K E +  D+L +  GE   ++ + +L      D+  SL + ++++L
Sbjct:  249 EIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMV-DILKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELMINPGETTVVNCIHRLQ--YTPDETVSLDSPRDTVL 450          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.960e-18
Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQ-----KEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLL 643
            +I + +S  GD  QR+  +F EAL  RI  +      A +S   +S+ + +   K F    P L + +   N+ I E       +H+ID       QW  LIQALS R  GPP LR+TGI  PQ      E +++   RL    +K ++PF+++ +    EN+  D L + +GE   ++ +L+L      D+  SL + +++ L
Sbjct:  234 EIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSR--TSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQ--YTPDETVSLNSPRDTAL 433          
The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CIGR1_ORYSJ5.424e-2333.70Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL4_ARATH1.023e-2134.92Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL14_ARATH1.336e-2130.16Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL23_ARATH2.976e-2132.39Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
SCL1_ARATH3.887e-2128.74Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SHR_ARATH6.630e-2134.52Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SCL33_ARATH9.573e-2030.53Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL7_ARATH4.751e-1933.16Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
SCL11_ARATH1.805e-1830.24Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH8.960e-1830.39Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bp
AAATCATGTAGCAAATGGTAATCTTGAAAATGCTAATCTTGCTCTAGACC
AAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCATTGCT
GCCTACTTTACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGGCCTGG
CCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGAAGAAA
TGCTTGTTCGGAAACTGTTTTTTGATATGTTCCCGTTCTTGAAAGTGGCT
TTTGTGCTCACAAATCAAGCTATTATTGAAGCAATGGAAGGGGAAAAGGT
GGTTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTGCAC
TCATTCAAGCTTTGAGTACAAGGCCTGAGGGGCCACCTCATTTGAGAATC
ACGGGGATTCATCCACAGAAGGAGGTGTTGGATCAAATGGCTCATAGATT
GACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTGG
TTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGGT
GAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCGC
TGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAATG
GGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCT
CCAAATGCTTCAGCAAAGATGGACAGCTTTCTTAATTCTCTGTGGGGCTT
GTCACCAAAAGTTATGGTGGTGACAGAACAGGATTCTAATCACCATGGCT
TG
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