CX046729

Overview
NameCX046729
Unique NameCX046729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.170e-17
Identity = 64/249 (25.70%), Postives = 111/249 (44.58%), Query Frame = 2
Query:   62 LASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHPQKEV------LDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKVMVVTEQDSN 790
            + S  G  +QR+  Y  E L  R+  S   ++K+L     +   E M    + +++ P+ K A+   N  I+EA+ GE  VH+ID   A+ +Q++ LIQ L+  P GPP LR+TG+   +        L  +  RL   A+   +PF+F+  +     +  + L ++ G A+ ++    LH +   D+  S+                                  D  L+ +  LSPK++ + EQ+SN
Sbjct:    1 MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTG-RELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHM--PDESVSV------------------------------ENHRDRLLHLIKSLSPKLVTLVEQESN 216          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: MOC_ORYSJ (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica GN=MOC1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.996e-17
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPE---GPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLENLDFDKLRVKTG-------------------EALAISSVLQLHSLLAADDYASLI 622
            ++  ASP GD   R+A +F  ALA R+       H  +        S    +   F  + PFL+ A +  NQAI+EA++G + VH++DL+A    QW  L+QA++ R +   GPP +R+TG    ++ L +  +RL   A  + +PF F   ++S             TG                   E LA++ V+ LH+L   D+ A+ +
Sbjct:   77 LAAAASPRGDAADRLAYHFARALALRVDAKAGHGHVVVGGGAARPASSGAYLA--FNQIAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQWPPLLQAIAERADPALGPPEVRVTGAGADRDTLLRTGNRLRAFARSIHLPFHFTPLLLSCATTAPHHVAGTSTGAAAAASTAAAATGLEFHPDETLAVNCVMFLHNLAGHDELAAFL 287          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.607e-17
Identity = 56/191 (29.32%), Postives = 100/191 (52.36%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALN---STRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQ-----KEVLDQMAHRLTEEAEKLDIPFQFNSVVSK-LENLDFDKLRVKTGEALAISSVLQLHSL 592
            QI +  SP GD  QR+A +F  AL  R+  S   + ++     S++  + ++ +    +F    PF+ + +  +N+ I++A +   V+H++D       QW   IQ LS    G   LRITGI  PQ      E +     RLTE  ++  +PF++N++ SK  E +  ++ +++  E LA+++VL+  +L
Sbjct:  307 QIRKQCSPVGDASQRLAHFFANALEARLEGSTGTMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASVLHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNL 497          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 54/192 (28.12%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGL----HKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQ-----KEVLDQMAHRLTEEAEKLDIPFQFNSVVSK-LENLDFDKLRVKTGEALAISSVLQLHSL 592
            QI Q +SP GD  QR+A  F  AL  R+  S   +    + AL S+   + ++ +   +++    PF+ + +  +   I++  +   V+H++D       QW   IQ++S R + P  LRITGI  PQ      E +++   RL E  ++ ++PF++ ++ S+  E +  + L ++  E LA+++ L+L +L
Sbjct:  274 QIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMIQTYYNALTSSLKDTAADTIRAYRVYLSSSPFVTLMYFFSIWMILDVAKDAPVLHIVDFGILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNL 465          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.100e-15
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:   74 DGDTMQRIAAYFTEALAQRILKSWPGLHK-----------ALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGI------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSV-VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +G  M+R+AA+FTEAL   +L+   G H               +    + ++ +   +L  DM P++K      NQAIIEA+  E+ VHVID +  E  QW +LIQ+L++   G PHLRIT +            + +   RLT  A  L  PF F+   +   E      L++  GEAL  + +L L  L
Sbjct:  154 NGSNMERLAAHFTEAL-HGLLEGAGGAHNNHHHHNNNKHYLTTNGPHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHVIDYDIMEGVQWASLIQSLASNNNG-PHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHL 342          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 54/187 (28.88%), Postives = 98/187 (52.41%), Query Frame = 2
Query:   50 QISQLASP-DGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGP--PHLRITGI----HPQKEV--LDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQL 583
            ++  L SP D   M+R+AA+FT  L+ ++L+    L    +   +   ++ +   +L  +M P++   ++   QAI+EA++ E+ +H++D +  E  QW +L+QAL +R  GP   HLRIT +    + +K V  + +   RLT  A+ +  PF +              L++  GEA+ I+ +L L
Sbjct:  131 RLKDLVSPGDRTNMERLAAHFTNGLS-KLLERDSVLCPQQHRDDVYDQADVISAFELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIGQPFSYQHCKLDTNAFSTSSLKLVRGEAVVINCMLHL 316          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 62/224 (27.68%), Postives = 108/224 (48.21%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRI-----------LKSWPGLHKALNSTRI--SSVSEEMLVRKL--------------FFDMFPFLKVAFVLTNQAIIEAMEGEK--VVHVIDLNAAEPAQWIALIQALSTRPEGP----PHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVK-------TGEALAISSVLQLHSLLAAD 604
            +S  +SP GD+ +R+   FT+AL+ RI           + +W      ++++ +  SSV +E  + +                  + PF++   +  NQAI++A E      +H++DL+ ++  QW  L+QAL+ R   P    P LRITG       L++   RLT  A+ L + FQF+++V   E+L    L+++        GE +A++ V  LH +   D
Sbjct:   67 LSLNSSPHGDSTERLVHLFTKALSVRINRQQQDQTAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDD 290          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 50/187 (26.74%), Postives = 90/187 (48.13%), Query Frame = 2
Query:   50 QISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIH-PQ-----KEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            QI   ++P GD  QR+A  F   L  R+  +   ++K + S +  S +  +   +LF    PF K+++ +TN+ I + +   + VHVID       QW  LI   S    G P +RITGI  PQ      + +++   RL   A+   +PF++ ++  K + +  + L +   E   ++ + +  +L
Sbjct:  369 QIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVS-KPRSAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAENL 552          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 58/202 (28.71%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIE--------AMEGEKVVHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGI---------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +++LASP GD  Q++A+YF + L  R+  S P   + L   S R +S          F ++ P+     V  N AI+E        A    +  H++DL+     QW  L++AL+TR  +  PHL IT +            + V+ ++  R+ + A  + +PF+F +V     L  LD D L ++ G A    +V  ++SL
Sbjct:  218 LNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL 419          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSI (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica GN=SHR2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEA-MEGEKV------------------VHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGIHP-------QKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +++LASP GD  Q++A+YF + L  R+  S P   + L   S R +S          F ++ P+     V  N AI+E+ +E                      +H++DL+     QW  L++AL+TR  +  PHL IT + P        + V+ ++  RL + A  + +PF F +V     L +LD   L ++ G A A  +V  +++L
Sbjct:  214 LNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNCVNAL 424          
The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SCL13_ARATH1.170e-1725.70Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
MOC_ORYSJ1.996e-1729.11Protein MONOCULM 1 OS=Oryza sativa subsp. japonica... [more]
SCL31_ARATH2.607e-1729.32Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL34_ARATH4.917e-1628.13Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
NSP2_MEDTR7.100e-1532.46Nodulation-signaling pathway 2 protein OS=Medicago... [more]
SCL26_ARATH4.602e-1428.88Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SCL18_ARATH1.339e-1327.68Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH3.298e-1226.74Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SHR1_ORYSJ4.307e-1228.71Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japoni... [more]
SHR2_ORYSI1.637e-1127.96Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bp
AAATCATGTAGCAAATGGTAATCTTGAAAATGCTAATCTTGCTCTAGACC
AAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCATTGCT
GCCTACTTTACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGGCCTGG
CCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGAAGAAA
TGCTTGTTCGGAAACTGTTTTTTGATATGTTCCCGTTCTTGAAAGTGGCT
TTTGTGCTCACAAATCAAGCTATTATTGAAGCAATGGAAGGGGAAAAGGT
GGTTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTGCAC
TCATTCAAGCTTTGAGTACAAGGCCTGAGGGGCCACCTCATTTGAGAATC
ACGGGGATTCATCCACAGAAGGAGGTGTTGGATCAAATGGCTCATAGATT
GACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTGG
TTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGGT
GAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCGC
TGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAATG
GGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCT
CCAAATGCTTCAGCAAAGATGGACAGCTTTCTTAATTCTCTGTGGGGCTT
GTCACCAAAAGTTATGGTGGTGACAGAACAGGATTCTAATCACCATGGCT
TG
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