CX046729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11 Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = 2 Query: 53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEA-MEGEKV------------------VHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGIHP-------QKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592 +++LASP GD Q++A+YF + L R+ S P + L S R +S F ++ P+ V N AI+E+ +E +H++DL+ QW L++AL+TR + PHL IT + P + V+ ++ RL + A + +PF F +V L +LD L ++ G A A +V +++L Sbjct: 214 LNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNAL 424
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11 Identity = 57/202 (28.22%), Postives = 95/202 (47.03%), Query Frame = 2 Query: 53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIE--------AMEGEKVVHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGI---------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592 +++LASP GD Q++A+YF + L R+ S + L S R +S F ++ P+ V N AI+E A + H++DL+ QW L++AL+TR + PHL IT + + V+ ++ R+ + A + +PF+F +V L LD D L ++ G A +V ++SL Sbjct: 218 LNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL 419 The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bpback to top |