CX046729

Overview
NameCX046729
Unique NameCX046729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIEA-MEGEKV------------------VHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGIHP-------QKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +++LASP GD  Q++A+YF + L  R+  S P   + L   S R +S          F ++ P+     V  N AI+E+ +E                      +H++DL+     QW  L++AL+TR  +  PHL IT + P        + V+ ++  RL + A  + +PF F +V     L +LD   L ++ G A A  +V  +++L
Sbjct:  214 LNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNAL 424          
BLAST of CX046729 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 57/202 (28.22%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   53 ISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKAL--NSTRISSVSEEMLVRKLFFDMFPFLKVAFVLTNQAIIE--------AMEGEKVVHVIDLNAAEPAQWIALIQALSTR-PEGPPHLRITGI---------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSV--VSKLENLDFDKLRVKTGEALAISSVLQLHSL 592
            +++LASP GD  Q++A+YF + L  R+  S     + L   S R +S          F ++ P+     V  N AI+E        A    +  H++DL+     QW  L++AL+TR  +  PHL IT +            + V+ ++  R+ + A  + +PF+F +V     L  LD D L ++ G A    +V  ++SL
Sbjct:  218 LNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSL 419          
The following BLAST results are available for this feature:
BLAST of CX046729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SHR2_ORYSJ2.792e-1127.96Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japoni... [more]
SHR1_ORYSI3.646e-1128.22Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9H04-P7-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046729 ID=CX046729; Name=CX046729; organism=Citrus sinensis; type=EST; length=802bp
AAATCATGTAGCAAATGGTAATCTTGAAAATGCTAATCTTGCTCTAGACC
AAATCTCGCAACTCGCCTCTCCTGATGGTGACACCATGCAACGCATTGCT
GCCTACTTTACCGAGGCACTTGCTCAAAGAATCCTCAAATCTTGGCCTGG
CCTTCACAAGGCCCTCAATTCCACTAGAATTAGTTCAGTTTCTGAAGAAA
TGCTTGTTCGGAAACTGTTTTTTGATATGTTCCCGTTCTTGAAAGTGGCT
TTTGTGCTCACAAATCAAGCTATTATTGAAGCAATGGAAGGGGAAAAGGT
GGTTCATGTGATTGATCTAAATGCAGCTGAGCCTGCACAGTGGATTGCAC
TCATTCAAGCTTTGAGTACAAGGCCTGAGGGGCCACCTCATTTGAGAATC
ACGGGGATTCATCCACAGAAGGAGGTGTTGGATCAAATGGCTCATAGATT
GACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTGG
TTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGGT
GAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCGC
TGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAATG
GGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCT
CCAAATGCTTCAGCAAAGATGGACAGCTTTCTTAATTCTCTGTGGGGCTT
GTCACCAAAAGTTATGGTGGTGACAGAACAGGATTCTAATCACCATGGCT
TG
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