DN617298

Overview
NameDN617298
Unique NameDN617298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:1101..1793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 69/86 (80.23%), Postives = 82/86 (95.35%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIP+NVK++VCDI P GL M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMNDL+SEYQQYQDAT
Sbjct:  344 WIPSNVKTAVCDIAPTGLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMNDLLSEYQQYQDAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIPNNVKSSVCDIPP GL MA TFIGNS+SIQEMFRR +   TAMFRRKAFLHWYT EGMDEMEFTE ESNMNDLVSEYQQYQDA+A
Sbjct:  140 WIPNNVKSSVCDIPPVGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEYQQYQDASA 226          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 67/86 (77.91%), Postives = 83/86 (96.51%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV++++C +PP+GL M++TF+GNSTS+QE+F+RV+ QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ+A+
Sbjct:  344 WIPNNVQTALCSVPPKGLKMSATFVGNSTSVQELFQRVATQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLMSEYQQYQEAS 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV ++ CDIPPRGL MA TF+GNST+IQE+F+RVS+QFTAMF+RKAFLHWYT EGMDEMEFTEAESNM DLV+EYQQYQDAT
Sbjct:  344 WIPNNVLTAQCDIPPRGLKMAVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEYQQYQDAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 67/87 (77.01%), Postives = 83/87 (95.40%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIPNNV+++ CDIPPRGL M+ TFIGNST+IQ++F+R++EQF+AMF+RKAFLHWYTGEGMDEMEFTEAESN+ DL++EYQQYQDA+A
Sbjct:  344 WIPNNVQTAQCDIPPRGLKMSVTFIGNSTAIQDVFKRIAEQFSAMFKRKAFLHWYTGEGMDEMEFTEAESNLQDLIAEYQQYQDASA 430          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 68/86 (79.07%), Postives = 81/86 (94.19%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV+++VC +PP+ L M++TFIGNSTSIQE+F+RV +QF+AMFRRKAFLHWYT EGMDEMEFTEAESNMNDLVSEYQQYQ+A+
Sbjct:  344 WIPNNVQTAVCSVPPKDLDMSATFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVSEYQQYQEAS 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            W+PNN+K++VCDIPP GL M+ TF GN+T++QE+ +RVSEQFTA FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  344 WLPNNIKTAVCDIPPWGLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV S+ CDIPPRG+ MA TF+GNST+IQE+F+RVS+ FTAMF+RKAFLHWYT EGMDEMEFTEAESNM DL++EYQQYQDAT
Sbjct:  344 WIPNNVLSAQCDIPPRGVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLIAEYQQYQDAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.564e-36
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV +S CDI PRGL M+ TF+GNST+IQE+F+RVS+QFTAMF+RKAFLHWYT EGMDEMEFTEAESNM DLV+EYQQYQDAT
Sbjct:  344 WIPNNVLASQCDIAPRGLRMSVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEYQQYQDAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.564e-36
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIPNNV ++ CDIPPRG  MA TF+GNST+IQE+F+RV++QF AMF+RKAFLHWYT EGMDEMEFTEAESNM DLV+EYQQYQDATA
Sbjct:  344 WIPNNVLTAQCDIPPRGCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLVAEYQQYQDATA 430          
The following BLAST results are available for this feature:
BLAST of DN617298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
TBB_ENCCU1.041e-3780.23Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB3_ANEPH1.360e-3786.21Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB_ASPFU1.776e-3777.91Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB_COPC72.319e-3782.56Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB_USTMA5.166e-3777.01Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_CANAL8.812e-3779.07Tubulin beta chain OS=Candida albicans GN=TUB2 PE=... [more]
TBB4Q_HUMAN8.812e-3781.61Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB1_SUIBO1.151e-3680.23Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_SCHCO2.564e-3681.40Tubulin beta chain OS=Schizophyllum commune GN=TUB... [more]
TBB_PLESA2.564e-3679.31Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617298 ID=DN617298; Name=DN617298; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTCCAAGGAAAAGAAATAGCATATCACATTATGGCATAATAGA
CAGTAACATAATAACATCATCGACCACAGAACATAAGAAGACAATGGCTA
AGGATAATAGAATACAAAAATAGATCAAATCCAGAATAGATAGCAAGGTA
AAGGTAGCACACACTACTACTTTCAAAACATGCATCCATCCTTTAATTTC
TCCATCCTCAATAGTCGATCCTCATCGATCCCATCATCCATCACTCACTT
TACTGCTACTTGATGTAAAAAACTCGAGAAAGAAAAACTATAACACATCA
TAGATCATTTTTTGCAATCCCAAGCAAGGTTGACAAAACCAGCTACACAG
ACAAATATGCATCATACACAACTTCTTCAAATATGATGCTCCAATTCTCC
CTCTTCCTCATCTTCATACTCGCCTTCCTCATCGGCGGTGGCATCCTGGT
ACTGCTGGTACTCAGACACGAGGTCATTCATATTGCTCTCAGCTTCAGTG
AACTCCATTTCATCCATCCCTTCACCAGTGTACCAGTGAAGGAAAGCCTT
TCTCCTAAACATAGCTGTGAATTGCTCACTCACTCTTCGGAACATTTCTT
GGATGGATGTTGAGTTCCCGATGAAGGTGGATGCCATGGAGAGACCTCTG
GGAGGAATGTCACAAACACTGGACTTCACATTGTTTGGAATCCACT
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