DN617298

Overview
NameDN617298
Unique NameDN617298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:1101..1793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 63/72 (87.50%), Postives = 71/72 (98.61%), Query Frame = -3
Query:  479 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 694
            WIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct:  270 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 341          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 63/84 (75.00%), Postives = 77/84 (91.67%), Query Frame = -3
Query:  443 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 694
            WIPNNVK++VCDIPP    +A TFIGN+T+IQE+F RVS+QF+AMFRR+AFLH++T EGMDEMEF+EAESNMNDL+SEYQQYQ+
Sbjct:  344 WIPNNVKTAVCDIPPIDFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFLHFFTSEGMDEMEFSEAESNMNDLISEYQQYQE 427          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 63/86 (73.26%), Postives = 76/86 (88.37%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPN +K+SVCD+ P G +M++ FIGNST+IQ++F+RV   F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSE QQY+ AT
Sbjct:  344 WIPNAIKASVCDVAPTGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQQYEAAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 63/86 (73.26%), Postives = 76/86 (88.37%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPN +K+SVCD+ P G +M++ FIGNST+IQ++F+RV   F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSE QQY+ AT
Sbjct:  344 WIPNAIKASVCDVAPTGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQQYEAAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = -3
Query:  443 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 694
            WIP+N+KSS+CDIPP+G  MA TFIGN+T+IQ++F+R+S  F AMFRRKAFLHWYT EGM+E+EFTEAESNMNDLV EYQQY +
Sbjct:  349 WIPHNIKSSICDIPPKGTPMAVTFIGNNTAIQDLFKRISIHFQAMFRRKAFLHWYTLEGMEELEFTEAESNMNDLVYEYQQYSN 432          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 59/85 (69.41%), Postives = 75/85 (88.24%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNNV+S+ C++ PRGL M+ TFIGN+TSIQE+F+RV + F  MFRR+AFLHWYTGEGMDEMEF+EA +NM+DL++EY QYQ+A
Sbjct:  344 WIPNNVQSAHCEVAPRGLKMSVTFIGNNTSIQELFKRVGDHFDVMFRRRAFLHWYTGEGMDEMEFSEASANMHDLIAEYTQYQEA 428          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = -3
Query:  500 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 694
            WIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct:  344 WIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 53/85 (62.35%), Postives = 75/85 (88.24%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNNV++SVC++PP+GL+ ++TFI NST++QE+F R + QF+ MF+RK FLHWYTGEGM+ +EF+EA+S++ DL+ EYQQYQ+A
Sbjct:  346 WIPNNVQTSVCNVPPKGLTTSATFIANSTAVQELFERTANQFSVMFKRKGFLHWYTGEGMEPVEFSEAQSDLEDLILEYQQYQNA 430          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIP+N+K+SVCDIP  G  ++S FIGN+T+I+  F+R   QF +MFRRKAFLHWY  EGMDE+EF+EAESN+ DLVSEYQQY +ATA
Sbjct:  346 WIPHNIKTSVCDIPAAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNLADLVSEYQQYGEATA 432          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIP+NV  S+C +PP G   A+  + NST +QE+F+R  +QF  MF+R+AFLHWYTGEGMD MEFTEAESN  DL+SEYQQYQ+AT
Sbjct:  348 WIPDNVSVSLCSVPPVGQPQAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEYQQYQEAT 433          
The following BLAST results are available for this feature:
BLAST of DN617298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
TBB_HALDI3.465e-3387.50Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBB3_ECHMU4.526e-3375.00Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB_PORYE5.911e-3373.26Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB_PORPU5.911e-3373.26Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB_DICDI1.008e-3273.81Tubulin beta chain OS=Dictyostelium discoideum GN=... [more]
TBB_USTVI6.535e-3269.41Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB3_SOYBN1.901e-3196.92Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB2_GEOCN7.989e-3062.35Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_CHOCR1.363e-2966.67Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB2_SUIBO5.725e-2863.95Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617298 ID=DN617298; Name=DN617298; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTCCAAGGAAAAGAAATAGCATATCACATTATGGCATAATAGA
CAGTAACATAATAACATCATCGACCACAGAACATAAGAAGACAATGGCTA
AGGATAATAGAATACAAAAATAGATCAAATCCAGAATAGATAGCAAGGTA
AAGGTAGCACACACTACTACTTTCAAAACATGCATCCATCCTTTAATTTC
TCCATCCTCAATAGTCGATCCTCATCGATCCCATCATCCATCACTCACTT
TACTGCTACTTGATGTAAAAAACTCGAGAAAGAAAAACTATAACACATCA
TAGATCATTTTTTGCAATCCCAAGCAAGGTTGACAAAACCAGCTACACAG
ACAAATATGCATCATACACAACTTCTTCAAATATGATGCTCCAATTCTCC
CTCTTCCTCATCTTCATACTCGCCTTCCTCATCGGCGGTGGCATCCTGGT
ACTGCTGGTACTCAGACACGAGGTCATTCATATTGCTCTCAGCTTCAGTG
AACTCCATTTCATCCATCCCTTCACCAGTGTACCAGTGAAGGAAAGCCTT
TCTCCTAAACATAGCTGTGAATTGCTCACTCACTCTTCGGAACATTTCTT
GGATGGATGTTGAGTTCCCGATGAAGGTGGATGCCATGGAGAGACCTCTG
GGAGGAATGTCACAAACACTGGACTTCACATTGTTTGGAATCCACT
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