DN135037

Overview
NameDN135037
Unique NameDN135037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135037_ssr21 microsatellite DN135037_ssr21:21..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5598 contig Csv1_Contig5598:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V     LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114          
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of DN135037 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  102 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 446
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
The following BLAST results are available for this feature:
BLAST of DN135037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIF_PIG7.482e-1434.78Macrophage migration inhibitory factor OS=Sus scro... [more]
MIF_SHEEP1.276e-1335.65Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN1.276e-1335.65Macrophage migration inhibitory factor OS=Bos taur... [more]
MIF_MACMU2.843e-1334.78Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA2.843e-1334.78Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN2.843e-1334.78Macrophage migration inhibitory factor OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca05c07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05c07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135037 ID=DN135037; Name=DN135037; organism=Citrus sinensis; type=EST; length=672bp
GGGGACGACTATCAGTNNNNGAAAGAAAGAAAGAAAGAAAGAAAGAGAGT
GGTTAGGGGGAAGCTCCAAGAGTAGGGTTTTCCGTCGGAAGTTTCGAGAA
GATGCCTTGCTTGAACATTTCAACTAACGTCAAACTCGATGGCGTTGACA
CGTCATCCATCCTCTCCGAGGCCACCTCCACTGTCGCCAACATCATCGGC
AAACCCGAGGCCTACGTGATGATTGTGTTGAAGGGATCAGTACCTATGTC
TTTTGGTGGAACTGAGGACCCGGCAGCTTATGGTGAGTTGGTGTCCATTG
GTGGCCTTAACCCTGATGTGAACAAGAAGCTGAGTGCTGCAATTTCTGCA
ATTCTTGAAAAGAAGCTGTCGGTACCCAAGTCACGATTCTTCATCAAGTT
TTATGACACAAAGGGTTCAAACTTTGGATGGAATGGATCCACCTTCTAGA
TATTATTCTCAAAGCATGGCGCCATGAACTCTGACAATTGTCTTATCTAT
ATGGTGATTACAATCTTTAGAACAATGTTAATAATTGGCTGAATATTGTG
TAATTTCTCCTATGATGTGTTTTCTTCTCGTTGGTGCTAGCCAACAATAT
TGTGGAATAGGAACTGTTTGGTTTATGGAGTAATATTACATTTGCCAAAA
AAAAAAAAAAAAAAAANNAAAA
back to top