DN134859

Overview
NameDN134859
Unique NameDN134859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:895..1308. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            M TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of DN134859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_AMBTC1.614e-1397.22Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA2.108e-1397.22Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA2.753e-1394.44Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO2.753e-1394.44Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU2.753e-1394.44Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU2.753e-1394.44Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV2.753e-1394.44Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR4.696e-1397.22Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA6.134e-1394.44Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU8.011e-1394.44Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionwca02d06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02d06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134859 ID=DN134859|Name=DN134859|organism=Citrus sinensis|type=EST|length=413bp
ATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGATTGTGTAA
TGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTGTTTCG
CTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCCCGGACG
CGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAACGTTCT
TAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGTGTTCG
CTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAAAGAGA
GGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTACCAATCCG
ACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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