DN134780

Overview
NameDN134780
Unique NameDN134780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:18..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 2.944e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 2.944e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 2.944e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.944e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.944e-60
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.022e-60
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.566e-60
Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    3 KPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.119e-59
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+   RKL+SHRR  +W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    3 KCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.110e-58
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+ A RKL +HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    5 KPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 1
Query:   88 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 507
            K RG+ A RKL+++RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    5 KPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
The following BLAST results are available for this feature:
BLAST of DN134780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_RAT2.944e-6079.4340S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_MOUSE2.944e-6079.4340S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_HUMAN2.944e-6079.4340S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA2.944e-6079.4340S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN2.944e-6079.4340S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_ICTPU5.022e-6078.7240S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_CAEEL8.566e-6075.8940S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_PIG1.119e-5978.7240S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_ASPFU2.110e-5878.0140S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR3.599e-5877.3040S ribosomal protein S23 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionwca01b11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134780 ID=DN134780; Name=DN134780; organism=Citrus sinensis; type=EST; length=569bp
CGGCCGGGGGCGGCGTCCTCTTGCACTCTCAAGCTCCAATGTCGTTCGTT
ACATTCAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTGGAA
TGGGAGCGGGTCGCAAGCTGAAGAGCCACCGAAGAAGACAAAGGTGGGCT
GATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATT
TGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCG
AGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTG
ATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTT
GAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAA
AGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAG
GTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACC
AAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTA
GCACTTTATTTTCATTAAT
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