DN134780

Overview
NameDN134780
Unique NameDN134780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:18..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.422e-38
Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 498
            G+ AG+KL   R+  RW+D+ YK+  L  + K  P  G+  AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G  GR G + GDIPGVR+KV+KV+G+SL  L K +KEK
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.057e-38
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.057e-38
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.216e-38
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.216e-38
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 1
Query:   76 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            P      G  A RKL+  R++ RW D+ YK+  L  +E   P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G  G KG A GDIPGVR+KVVKV+ V+L  L K K EKP
Sbjct:    2 PGKKSPAGEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSELLKGKIEKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 79/137 (57.66%), Postives = 104/137 (75.91%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A++  KK+KP
Sbjct:    9 GLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.053e-37
Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 498
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L K +KEK
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.682e-37
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 504
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  AKGIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.682e-37
Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 498
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L K +KEK
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ +   L   R+ +R AD +Y+K  LG ++K    G +  AK IVLEKIG+EAKQPNSAIRK  R QLI  GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of DN134780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PICTO1.422e-3855.8830S ribosomal protein S12P OS=Picrophilus torridus... [more]
RS12_PYRIL7.057e-3857.6630S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_PYRCJ7.057e-3858.3930S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE9.216e-3857.6630S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_METKA9.216e-3856.9430S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS12_PYRAR1.204e-3757.6630S ribosomal protein S12P OS=Pyrobaculum arsenati... [more]
RS12_THEVO2.053e-3757.3530S ribosomal protein S12P OS=Thermoplasma volcani... [more]
RS12_THECE2.682e-3759.4230S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_THEAC2.682e-3757.3530S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS23_ENCCU3.502e-3758.8240S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionwca01b11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134780 ID=DN134780; Name=DN134780; organism=Citrus sinensis; type=EST; length=569bp
CGGCCGGGGGCGGCGTCCTCTTGCACTCTCAAGCTCCAATGTCGTTCGTT
ACATTCAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTGGAA
TGGGAGCGGGTCGCAAGCTGAAGAGCCACCGAAGAAGACAAAGGTGGGCT
GATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATT
TGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCG
AGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTG
ATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTT
GAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAA
AGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAG
GTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACC
AAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTA
GCACTTTATTTTCATTAAT
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