DN134780

Overview
NameDN134780
Unique NameDN134780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:18..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   76 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 504
            P      G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    2 PGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   76 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 504
            P      G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    2 PGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35
Identity = 77/144 (53.47%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   76 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            P      G+ A RKL+  R + RW+ + +K+  L  + K  P  G+  A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK + AFVP DG LN I E+DEV+I G  G +G ++GDIPGVR+KVV V+GVSL A+ K KK+KP
Sbjct:    2 PGKKAPNGLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 1
Query:   94 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            +G+ A RKL+  R +  W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.278e-35
Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 1
Query:   94 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            +GM A RKL+  R + RW  + +K+  L  + K  P  G+  A+G+VLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:    8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 76/137 (55.47%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   94 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 498
            RG+ A RKL  +R++ RW+D+ + +  LG   K  P  G+  A+GIVLEKIGIEA+QPNSAIRK  RVQLIKNG++I AF P DG +N+I+E+DEV++    GR G ++GDIPGVR+KVVKV+  SL  L + +KEK
Sbjct:    3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 504
            G+ A RKL+  R + RW+++ +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ + AFVP DG L  ++E+DEVLI G  G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+
Sbjct:    9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 9.537e-35
Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ A RK++   ++ RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG + +I+E+DEV++    GR G ++GDIPGVRFKVV V+ VSL  +   +KEKP
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.627e-34
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G  A RKL   R+  RW+D+ Y +  L  +E   P  G+  AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++I AF P DG +N+I+E+DEV I G  GR G + GDIPGVRF+V KV+ VSL  +   K++KP
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of DN134780 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.627e-34
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   97 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 501
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
The following BLAST results are available for this feature:
BLAST of DN134780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRFU6.605e-3655.1730S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB6.605e-3655.1730S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_IGNH41.127e-3553.4730S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_SULAC1.922e-3554.3530S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO3.278e-3553.6230S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_ARCFU4.281e-3555.4730S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_HYPBU5.591e-3553.6230S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_METTP9.537e-3552.5530S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_UNCMA1.627e-3455.4730S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_METS31.627e-3454.0130S ribosomal protein S12P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionwca01b11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134780 ID=DN134780; Name=DN134780; organism=Citrus sinensis; type=EST; length=569bp
CGGCCGGGGGCGGCGTCCTCTTGCACTCTCAAGCTCCAATGTCGTTCGTT
ACATTCAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTGGAA
TGGGAGCGGGTCGCAAGCTGAAGAGCCACCGAAGAAGACAAAGGTGGGCT
GATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATT
TGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCG
AGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTG
ATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTT
GAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAA
AGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAG
GTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACC
AAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTA
GCACTTTATTTTCATTAAT
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