DC900408

Overview
NameDC900408
Unique NameDC900408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4114 contig Csv1_Contig4114:85..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 1
Query:   58 SYPYIGKRGKCQFD--SEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAI---FMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCR---GRGMCGMNTM 438
            +YPY  + G+C  D  +EK  V +  + N+P +        V + P+++ L+A    F     G  + P  CG   ++H V +VGYG +G          YWI+KNSW   WG+ GY R+ R   G G CG+ TM
Sbjct:  214 NYPYTAQDGECNLDLQNEKY-VTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKHYSSGIFTGP--CGTA-IDHAVTIVGYGTEG-------GIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATM 337          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   55 SSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGV-SCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCR--GRGMCGM 429
            ++YPY   +G CQ  S+ +++   N      +     A  V    +AI  ++   Q Y  G+ S P  CG K LNHGV +VGY A            YWI++NSWG+ WG+ GY R+ R  G G+CG+
Sbjct:   85 ANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGP--CGTK-LNHGVTIVGYQAN-----------YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGI 198          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   58 SYPYIGKRGKCQFDS-EKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA--IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRG----RGMCGM 429
            SYPY  + G C  +      V +    ++P +        V + P+++ + A     Q Y  GV     CG + L+HGV +VGYGA      R G + YWI+KNSWG++WG+ GY R+ RG    RG CG+
Sbjct:  215 SYPYAEQDGTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGR-CGTE-LDHGVAIVGYGAT-----RDGTK-YWIVKNSWGEEWGESGYIRMQRGISDKRGKCGI 337          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   55 SSYPYIGKRGKCQFDSEKI-AVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA--IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRG----RGMCGM 429
            ++YPY    G C    E   AV +    N+P ++       V + P+++ ++A     Q Y  GV     CG + L+HGV +VGYG        +    YW +KNSWG +WG+ GY R+ RG     G+CG+
Sbjct:  211 ANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGS-CGTE-LDHGVAIVGYGTT------IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 334          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   58 SYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIF-MQTYIGGV-SCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRG----RGMCGM 429
            +YPY+  +G C  +S   +  +  ++ +  ++ +   + V + P+A  ++A    Q Y GGV S P  CG   LNH + ++GYG             YWI++NSWG  WG+ GY R+ RG     G+CG+
Sbjct:  207 NYPYLAYQGTCNANSFPNSAYITGYSYVRRNDERSMMYAVSNQPIAALIDASENFQYYNGGVFSGP--CGTS-LNHAITIIGYGQDS------SGTKYWIVRNSWGSSWGEGGYVRMARGVSSSSGVCGI 327          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   61 YPYIGKRGKCQFDS-EKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIF--MQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRG----RGMCGMNTM 438
            YPY  + G C+    E   V +    ++P ++ +     + H PL++ ++A     Q Y GGV     CG   L+HGV  VGYG+   S        Y I+KNSWG +WG+ GY RL R      G+CG+N M
Sbjct:  225 YPYSMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQFYSGGVFDGR-CGVD-LDHGVAAVGYGSSKGS-------DYIIVKNSWGPKWGEKGYIRLKRNTGKPEGLCGINKM 348          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 1
Query:   61 YPYIGKRGKCQFDSEKIAVRVAN--FTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGM 429
            YPY G    C+   ++  V      +  +   E ++   L   GP+ + ++A  +  Y  G+     C    LNH VLLVGYG +        N P+W  KN+WGK WG+ GY+R+ +    CGM
Sbjct:  202 YPYAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDASGIVNYHHGIIH--YCENYGLNHAVLLVGYGVEN-------NVPFWTFKNTWGKDWGEEGYFRVRQNVDACGM 317          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   61 YPYIGK-RGKCQFDSEKIAVRVANFTNIPV-DENQIAAHLVHHGPLAIGLNAIF--MQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGR-GMCGMNTM 438
            YPY  K   +C+F    +A ++ ++  I   DEN +   L+ + P+++ ++A     Q Y  GV     C  + L+HGVL VG G           + Y+I+KNSWG  WG +GY  + R +   CG++TM
Sbjct:  209 YPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNALLLN-PVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDN-------GEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTM 331          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 1
Query:   55 SSYPYIGKRGKCQFDSEKIAVRVANFTNI-PVDENQIAAHLVHHGPLAIGLNAI--FMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRG-MC 423
            S YPY+G   +C++      V    F  I P DE  +   +   GP+ +G++      + Y  GV     CG+   +H VL VGYG             YWI+KNSWG  WG  GY  + R RG MC
Sbjct:  267 SRYPYVGTEQRCRWQQSIAVVTDNGFNEIQPGDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSEGNCGRP--DHAVLAVGYGTHP------SYGDYWIVKNSWGTDWGKDGYVYMARNRGNMC 385          
BLAST of DC900408 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 42/129 (32.56%), Postives = 60/129 (46.51%), Query Frame = 1
Query:   55 SSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAI---FMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCR-GRGMCGM 429
            S YPY    G C+   + +A    +       E  +   +  +GP+A+G++A    F     G +     C  + +NH V  VGYG+         N  YWII+NSWG  WGD GY+ L R    MCG+
Sbjct:  175 SDYPYKAVAGTCK-KVKNVATVTGSRRVTDGSETGLQTIIAENGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGSNS-------NGKYWIIRNSWGTSWGDAGYFLLARDSNNMCGI 295          
The following BLAST results are available for this feature:
BLAST of DC900408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ACTN_ACTDE2.516e-1234.07Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
ERVC_TABDI3.286e-1235.94Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSP_HEMSP3.286e-1235.88Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSEP_RICCO3.286e-1233.33Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
BROM1_ANACO3.286e-1232.31Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
XCP2_ARATH4.292e-1235.34Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CATV_NPVBS5.606e-1232.00Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CYSP3_DICDI9.562e-1232.82Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL_BRUPA9.562e-1234.65Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
ACP1_ENTHI1.249e-1132.56Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionDC900408 VSS Citrus sinensis cDNA clone VS28985 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900408 ID=DC900408; Name=DC900408; organism=Citrus sinensis; type=EST; length=684bp
TGAGGCCTCATGACAATGCATCCAATATTGATCGCGACTGAGGGCTAAAN
AGANAGTTCATATCCTTATATTGGGAAGCGTGGCAAATGCCAATTCGATT
CAGAGAAAATAGCCGTTCGAGTTGCAAATTTTACCAATATTCCTGTCGAT
GAGAACCAAATTGCTGCACATTTAGTCCACCACGGTCCTCTGGCTATTGG
GTTGAACGCTATATTCATGCAAACATACATTGGGGGAGTCTCATGCCCGC
TAATCTGCGGCAAGAAATGGCTCAACCACGGCGTTCTGCTCGTCGGGTAT
GGTGCCAAGGGCTTCTCAATTCTTAGGCTTGGAAACCAGCCGTATTGGAT
CATCAAGAATTCGTGGGGCAAGCAATGGGGAGACCATGGGTACTACCGGC
TCTGCCGAGGGCGTGGCATGTGTGGAATGAACACCATGGTTTCTGCAGTG
GTCACTCAAGTCTCCTCCTAAACTTGAAGTCCCTCTTATTAAGTTGGAAT
ATCTACAGAAAGCAATATAGACAGCTCATGTTATATGGTAGCTAGTTTCC
CTTTTGTTCTTGTTTGTGATCTTCTAATTATTGAAGCTTTTCCGGTTTCA
TAATTCCCCTTTCTCAAGTAAGTTCTGGATTAGACTTGAAAATGCTTTTC
AGACCTGCTCTTCTACATACTATTGTGTCTTCCA
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