DC900406

Overview
NameDC900406
Unique NameDC900406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1245
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3957 contig Csv1_Contig3957:1364..2608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLDA_DICDI (Phospholipase D A OS=Dictyostelium discoideum GN=pldA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.611e-21
Identity = 75/236 (31.78%), Postives = 109/236 (46.19%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIA------MGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGML 806
            I+RSI  AY+ AI  A ++IYIENQ F+ +              N  + I  E+  +I   I   E F V+IV+P   +G  E   ++ ++ WQ  T+      +++ LR      D   Y+ F  L                   +  ++  Q      IYVH+K+MIVDD  II+GSANIN RS+ G RD+E+A      +   Q         A   +  FR+ LW EHLG+L
Sbjct:  576 IERSIHTAYVQAIEDANHYIYIENQNFVSTHAP-----------NVWNQISFEIVKRIKRAIRKKEVFRVFIVIPCQQDGKVEETQIKGLMHWQYSTIIRGENTIMKLLRRDCPDVDLTEYICFLSLRTHAFL-------------EGTFVTEQ------IYVHSKLMIVDDRTIIVGSANINDRSLIGERDSELAFIIRDEIDTIQTKMNGQDYIASRLVFNFRLRLWKEHLGLL 781          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: YA2G_SCHPO (Uncharacterized protein C2F7.16c OS=Schizosaccharomyces pombe GN=SPAC2F7.16c PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.230e-20
Identity = 85/259 (32.82%), Postives = 130/259 (50.19%), Query Frame = 3
Query:   87 AGLVS-GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EG---FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQ-----IHGFRMSLWYEHLGMLDDTFLQPE 830
            AGL S G  + +++SIQ+AY+  I ++++FIYIENQ+F+ S+   + +G   E     + +   L  +I+   +  E++   I++P+ P  EG     E GS++ I++ Q R++      +   L AKGI  D   YL F+  G R     GE                 E    MIYVHAK++I DD   +IGSANIN+RS+ G RD+EIA        + +++  +        H  R  L  EHLG+  D   Q E
Sbjct:  794 AGLWSLGLVDTVEQSIQNAYVTCIEKSEHFIYIENQFFVTST---TCEGTTIE-----NRVGDALVERIIRAHKNNEKWRGVIMIPLLPGFEGQIDLQEGGSLRLIVECQYRSICHGEHSIFGRLNAKGI--DGSKYLRFY--GLRGWAHLGENH---------------ELVTEMIYVHAKILIADDRVAVIGSANINERSLLGNRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGLETDVLEQRE 1025          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLDP1_ARATH (Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 81/259 (31.27%), Postives = 127/259 (49.03%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPE---GFPESG--SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHG-----FRMSLWYEHLGMLD---DTFLQPESSECVKKV 854
            ++ SI  AY   I +A++FIYIENQ+F+  S     D +K   + AL+        +I+      + F V +V+P+ P    G  +SG  SV+AI+ WQ RT+   +  ++  L    I     +Y++F+  G R   +  E  P    +               +YVH+K+MIVDD   +IGSANIN RS+ G+RD+EI +       + +R+  +    G      R+SLW EHLG+     D  + P S    K++
Sbjct:  756 VEESIHSAYRSLIDKAEHFIYIENQFFI--SGLSGDDTVKNRVLEALYK-------RILRAHNEKKIFRVVVVIPLLPGFQGGIDDSGAASVRAIMHWQYRTIYRGHNSILTNLY-NTIGVKAHDYISFY--GLRAYGKLSEDGPVATSQ---------------VYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVLIEDTELVDSRMAGKPWKAGKFSSSLRLSLWSEHLGLRTGEIDQIIDPVSDSTYKEI 987          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLDP2_ARATH (Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 75/236 (31.78%), Postives = 119/236 (50.42%), Query Frame = 3
Query:  126 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPE---GFPESGS--VQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHG-----FRMSLWYEHLGM 803
            SI  AY   I+ A++FIYIENQ+F+         G++ E+   L+ + + L  +I+   E  + F V IV+P+ P    G  + G+  V+A++ WQ RT+      ++  L A  +    ++Y++F+  G R   R  E  P    +               IYVH+K+MIVDD   +IGS+NIN RS+ G+RD+EI +       + + +     + G      R SLW EHLG+
Sbjct:  714 SIHRAYCSLIQNAEHFIYIENQFFIS--------GLEKED-TILNRVLEALYRRILKAHEENKCFRVVIVIPLLPGFQGGIDDFGAATVRALMHWQYRTISREGTSILDNLNAL-LGPKTQDYISFY--GLRSYGRLFEDGPIATSQ---------------IYVHSKLMIVDDRIAVIGSSNINDRSLLGSRDSEIGVVIEDKEFVESSMNGMKWMAGKFSYSLRCSLWSEHLGL 922          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD2_BOVIN (Phospholipase D2 OS=Bos taurus GN=PLD2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 68/202 (33.66%), Postives = 111/202 (54.95%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            ++ SI +AY+H IR +++F+YIENQ+F+  S     DG        L+ +  E+  +I+   + G+ F VY+++P+ P  EG   +G   S+QAIL +  RT+      ++  L+A  +  + RNY++    G R     G +  +E                 +IY+H+KM+I DD  +IIGSANIN RS+ G RD+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCS-----DGR-----TVLNKVGDEIVDRILKAHKQGQCFRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKA-AMGTEWRNYISV--CGLRTHGELGGHPVSE-----------------LIYIHSKMLIADDRTVIIGSANINDRSLLGKRDSELAV 789          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD2_MOUSE (Phospholipase D2 OS=Mus musculus GN=Pld2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.617e-18
Identity = 68/202 (33.66%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            ++ SI +AY+H IR +++F+YIENQ+F+  S     DG        L+ +  E+  +I+   E G+ F VY+++P+ P  EG   +G   S+QAIL +  RT+      ++  L+A  +    R+Y++    G R     G +  +E                 +IY+H+KM+I DD  +IIGSANIN RS+ G RD+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCS-----DG-----RTVLNKVGDEIVDRILKAHEQGQCFRVYLLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEHSILHRLKA-AMGTAWRDYMSI--CGLRTHGELGGHPISE-----------------LIYIHSKMLIADDRTVIIGSANINDRSLLGKRDSELAI 789          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD2_RAT (Phospholipase D2 OS=Rattus norvegicus GN=Pld2 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 7.616e-18
Identity = 67/202 (33.17%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            ++ SI +AY+H IR +++F+YIENQ+F+  S     DG        L+ +  E+  +I+   E G+ F VY+++P+ P  EG   +G   S+QAIL +  RT+      ++  L+A  +    R+Y++    G R     G +  +E                 +IY+H+K++I DD  +IIGSANIN RS+ G RD+E+A+
Sbjct:  618 LESSILNAYLHTIRESQHFLYIENQFFISCS-----DG-----RTVLNKVGDEIVDRILKAHEQGQCFRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKA-AMGTAWRDYMSI--CGLRTHGELGGHPISE-----------------LIYIHSKLLIADDRTVIIGSANINDRSLLGKRDSELAI 789          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD1_MOUSE (Phospholipase D1 OS=Mus musculus GN=Pld1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.299e-17
Identity = 65/201 (32.34%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  120 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            + SI  AYIH I  +K++IYIENQ+F+  +          ++    + +   ++ +I+     G+R+ VYIV+P+ P  EG   +G   ++QAI+ +  RTM      +++ L+ + +     NY++F  L     +   E E     E              +IYVH+K++I DD  +IIGSANIN RSM G RD+E+A+
Sbjct:  759 EESIHAAYIHVIENSKHYIYIENQFFISCA----------DDKVVFNKVGDRIAQRILKAHREGQRYRVYIVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGESSILEQLKPE-LGNKWINYISFCGL-----RTHAELEGNLVTE--------------LIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAV 929          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD1_RAT (Phospholipase D1 OS=Rattus norvegicus GN=Pld1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 4.936e-17
Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 3
Query:  120 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            + SI  AY H I  +K++IYIENQ+F+  +          ++    + +   ++ +I+     G+R+ VYIV+P+ P  EG   +G   ++QAI+ +  RTM      +++ L+ + +     NY++F  L     +   E E     E              +IYVH+K++I DD  +IIGSANIN RSM G RD+E+A+
Sbjct:  759 EESIHAAYTHVIENSKHYIYIENQFFISCA----------DDKVVFNKVGNAIAQRILKAHREGQRYRVYIVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGESSILEQLKPE-LGNKWINYISFCGL-----RTHAELEGNLVTE--------------LIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAV 929          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLDB_DICDI (Phospholipase D B OS=Dictyostelium discoideum GN=pldB PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.447e-17
Identity = 70/241 (29.05%), Postives = 119/241 (49.38%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKE-LSLKIVSKIEAG----ERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPAR----GQI-HGFRMSLWYEHLGMLD 809
            ++ S   AY+  I+ A++FIYI+N +F+ S       G K         +PK  ++L I++++       E+F V I+VP+ P G     S + I+ W  RT+    + +++ L+ +    D   Y++F  +  R+ + +G+    E+                 IYVH+K++IVDD   +IGS NIN RSM G+RD+E+A+       L   +  +    G+  H  R+ LW  HL + D
Sbjct:  907 VEDSCYKAYLGLIKNAQHFIYIQNLFFISSC------GSK---------LPKNRIALAILNRVRRAITLKEKFRVIIMVPISPSGDLALASSRMIIGWTNRTISQGGQSILELLKNEFPDVDLDQYISFNSI--RQWEANGDRIFTEQ-----------------IYVHSKVLIVDDRVAVIGSCNINDRSMMGSRDSELAVVVSDQSKLLITMNGKPFKVGKFPHTLRVGLWKTHLNLTD 1113          
The following BLAST results are available for this feature:
BLAST of DC900406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PLDA_DICDI9.611e-2131.78Phospholipase D A OS=Dictyostelium discoideum GN=p... [more]
YA2G_SCHPO6.230e-2032.82Uncharacterized protein C2F7.16c OS=Schizosaccharo... [more]
PLDP1_ARATH8.136e-2031.27Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP... [more]
PLDP2_ARATH6.888e-1931.78Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP... [more]
PLD2_BOVIN6.888e-1933.66Phospholipase D2 OS=Bos taurus GN=PLD2 PE=2 SV=1[more]
PLD2_MOUSE2.617e-1833.66Phospholipase D2 OS=Mus musculus GN=Pld2 PE=1 SV=2[more]
PLD2_RAT7.616e-1833.17Phospholipase D2 OS=Rattus norvegicus GN=Pld2 PE=1... [more]
PLD1_MOUSE1.299e-1732.34Phospholipase D1 OS=Mus musculus GN=Pld1 PE=1 SV=1[more]
PLD1_RAT4.936e-1731.84Phospholipase D1 OS=Rattus norvegicus GN=Pld1 PE=1... [more]
PLDB_DICDI6.447e-1729.05Phospholipase D B OS=Dictyostelium discoideum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionDC900406 VSS Citrus sinensis cDNA clone VS28984 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900406 ID=DC900406; Name=DC900406; organism=Citrus sinensis; type=EST; length=1245bp
ATGACACATGGAATGTGCAATTGTTTAGATCCATTGATGGTGGGGCTGCA
TTTGGCTTCCCAGAGACGCCTGAAGATGCAGCTAGAGCTGGGCTTGTTAG
TGGGAAGGATAATATCATTGACCGCAGCATTCAGGATGCTTATATCCATG
CTATCCGGCGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTT
GGAAGCTCTTTTGCTTGGAGTGCTGATGGCATTAAGCCTGAGGAAATTAA
TGCTTTGCATCTGATTCCAAAGGAGCTCTCACTTAAGATTGTTAGTAAGA
TTGAGGCTGGGGAGAGATTTACCGTATATATTGTTGTCCCAATGTGGCCA
GAGGGGTTTCCAGAGTCTGGTTCAGTTCAGGCAATATTAGATTGGCAGAG
AAGGACAATGGATATGATGTATAAGGATGTTGTTCAGGCTCTTAGAGCAA
AGGGCATTATGGAAGATCCCAGGAACTATTTGACATTCTTCTGCCTTGGG
AATCGGGAGGTGAAGAGGAGTGGTGAATATGAACCTGCAGAAAGGCCGGA
GGATGATTCAGACTATCTTAGAGCTCAGGAAGCTCGACGCTTCATGATCT
ACGTTCATGCCAAGATGATGATTGTTGATGACGAATACATTATAATTGGA
TCTGCCAACATCAACCAGCGATCAATGGAGGGTGCCAGGGACACTGAGAT
AGCCATGGGAGGCTACCAACCATATCATTTGTCAACCAGGGTGCCAGCAC
GAGGCCAGATACACGGCTTCCGTATGTCACTATGGTACGAGCACCTAGGC
ATGCTCGATGACACCTTCCTCCAGCCAGAAAGTAGCGAATGTGTTAAGAA
GGTTAACCAGATTGCCGAACGGTATTGGGACCTGTACTCCAGTGAGTCTC
TTGAGCATGACTTGCCCGGTCACTTGCTCCGCTACCCCATTGGTGTTTCT
GGTGAAGGAGATGTCACGGAGTTGCCAGGAACCGAGTTCTTCCCCGACAC
CAAGGCTCGTGTTCTCGGTACCAAATCGGATTATATGCCCCCAGTCCTGA
CCACCTGATGCTCTCCANAGGGTGCCAAAAATAATTTCGTAGTTGCGAAC
TACCGGTTATGGTAGTATAGCAAATAATAAATGATGTGTATTAAAACCAA
CAGGTGTGGTATTGTTTTTCTGCTTTGGTTCAGAGATGTGGTGTGATTTG
GTGATATACTGACGGGAAACTTATTAAGTCTGTTTATTTGTGCAT
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