DC900406

Overview
NameDC900406
Unique NameDC900406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1245
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3957 contig Csv1_Contig3957:1364..2608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: SPO14_YEAST (Phospholipase D1 OS=Saccharomyces cerevisiae GN=SPO14 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 8.420e-17
Identity = 72/236 (30.51%), Postives = 116/236 (49.15%), Query Frame = 3
Query:  126 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP------ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHG-----FRMSLWYEHLG 800
            SIQ+AY+  I ++++FIYIENQ+F+ S+  W+   +       L+ I   L  +IV   +  + +  +I++P+ P GF       E+ S++ I+ +Q +++          L+   I  DP  Y+ FF L     ++   + P ER   +             +YVHAK++I DD   IIGSANIN+RS  G RD+E+A+       + T++       G      R  L  EHLG
Sbjct:  958 SIQNAYLKLIEQSEHFIYIENQFFITST-VWNGTCV-------LNKIGDALVDRIVKANQEKKPWKAFILIPLMP-GFDSPVDTAEASSLRLIMQFQYQSISRGEHSTFSKLKKLNI--DPAQYIQFFSL-----RKWSTFAPNERLITEQ------------LYVHAKILIADDRRCIIGSANINERSQLGNRDSEVAILIRDTDLIKTKMNGDDYYAGKFPWELRQRLMREHLG 1165          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD2_HUMAN (Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.436e-16
Identity = 65/202 (32.18%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  117 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            ++ SI +AY+H IR +++F+YIENQ+F+  S     DG        L+ +  E+  +I+   + G  + VY+++P+ P  EG   +G   S+QAIL +  RT+      ++  L+A  +    R+Y++    G R     G +  +E                 +IY+H+K++I DD  +IIGSANIN RS+ G RD+E+A+
Sbjct:  618 LENSILNAYLHTIRESQHFLYIENQFFISCS-----DGR-----TVLNKVGDEIVDRILKAHKQGWCYRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKA-AMGTAWRDYISI--CGLRTHGELGGHPVSE-----------------LIYIHSKVLIADDRTVIIGSANINDRSLLGKRDSELAV 789          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLD1_HUMAN (Phospholipase D1 OS=Homo sapiens GN=PLD1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.200e-16
Identity = 62/201 (30.85%), Postives = 105/201 (52.24%), Query Frame = 3
Query:  120 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 707
            + SI  AY+H I  ++++IYIENQ+F+  +          ++    + I   ++ +I+      +++ VY+V+P+ P  EG   +G   ++QAI+ +  RTM      ++  L+A+ +     NY++F  L     +   E E     E              +IYVH+K++I DD  +IIGSANIN RSM G RD+E+A+
Sbjct:  759 EESIHAAYVHVIENSRHYIYIENQFFISCA----------DDKVVFNKIGDAIAQRILKAHRENQKYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGENSILGQLKAE-LGNQWINYISFCGL-----RTHAELEGNLVTE--------------LIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAV 929          
BLAST of DC900406 vs. ExPASy Swiss-Prot
Match: PLDC_DICDI (Phospholipase D C OS=Dictyostelium discoideum GN=pldC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.486e-13
Identity = 69/263 (26.24%), Postives = 123/263 (46.77%), Query Frame = 3
Query:  114 IIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRV-----PARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLY 887
            +++ SI  AY++ I  +++FIYI+NQ+F+ S       G           I K +   ++      + F V +++P+  EG       Q I+ +  +++  +  ++++      I +    YL+   L N +               + D +  ++     IYVH+K++IVDD+  IIGSANIN RS+ G+RD+EI         + +RV      A    H  R +LW  HLG++ +    P  S+ +K +  I   Y D++
Sbjct: 1334 VLENSIYKAYLNLINLSQHFIYIQNQFFISSV------GFTQPNNQIAFAIYKRIEKAVL----LNQVFRVILLLPVHCEGDIYDVDTQLIIKYTEKSITGIKTELLKKFPEMDIDQ----YLSINSLRNWDA--------------NGDIIFTEQ-----IYVHSKVLIVDDKIAIIGSANINDRSLNGSRDSEICAIIEDRDLVDSRVNGLPYKAAKFAHNLRCNLWEYHLGLISNP--DPLLSDRIKDL-VIDSTYHDIW 1560          
The following BLAST results are available for this feature:
BLAST of DC900406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SPO14_YEAST8.420e-1730.51Phospholipase D1 OS=Saccharomyces cerevisiae GN=SP... [more]
PLD2_HUMAN1.436e-1632.18Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2[more]
PLD1_HUMAN3.200e-1630.85Phospholipase D1 OS=Homo sapiens GN=PLD1 PE=1 SV=1[more]
PLDC_DICDI1.486e-1326.24Phospholipase D C OS=Dictyostelium discoideum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionDC900406 VSS Citrus sinensis cDNA clone VS28984 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900406 ID=DC900406; Name=DC900406; organism=Citrus sinensis; type=EST; length=1245bp
ATGACACATGGAATGTGCAATTGTTTAGATCCATTGATGGTGGGGCTGCA
TTTGGCTTCCCAGAGACGCCTGAAGATGCAGCTAGAGCTGGGCTTGTTAG
TGGGAAGGATAATATCATTGACCGCAGCATTCAGGATGCTTATATCCATG
CTATCCGGCGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTT
GGAAGCTCTTTTGCTTGGAGTGCTGATGGCATTAAGCCTGAGGAAATTAA
TGCTTTGCATCTGATTCCAAAGGAGCTCTCACTTAAGATTGTTAGTAAGA
TTGAGGCTGGGGAGAGATTTACCGTATATATTGTTGTCCCAATGTGGCCA
GAGGGGTTTCCAGAGTCTGGTTCAGTTCAGGCAATATTAGATTGGCAGAG
AAGGACAATGGATATGATGTATAAGGATGTTGTTCAGGCTCTTAGAGCAA
AGGGCATTATGGAAGATCCCAGGAACTATTTGACATTCTTCTGCCTTGGG
AATCGGGAGGTGAAGAGGAGTGGTGAATATGAACCTGCAGAAAGGCCGGA
GGATGATTCAGACTATCTTAGAGCTCAGGAAGCTCGACGCTTCATGATCT
ACGTTCATGCCAAGATGATGATTGTTGATGACGAATACATTATAATTGGA
TCTGCCAACATCAACCAGCGATCAATGGAGGGTGCCAGGGACACTGAGAT
AGCCATGGGAGGCTACCAACCATATCATTTGTCAACCAGGGTGCCAGCAC
GAGGCCAGATACACGGCTTCCGTATGTCACTATGGTACGAGCACCTAGGC
ATGCTCGATGACACCTTCCTCCAGCCAGAAAGTAGCGAATGTGTTAAGAA
GGTTAACCAGATTGCCGAACGGTATTGGGACCTGTACTCCAGTGAGTCTC
TTGAGCATGACTTGCCCGGTCACTTGCTCCGCTACCCCATTGGTGTTTCT
GGTGAAGGAGATGTCACGGAGTTGCCAGGAACCGAGTTCTTCCCCGACAC
CAAGGCTCGTGTTCTCGGTACCAAATCGGATTATATGCCCCCAGTCCTGA
CCACCTGATGCTCTCCANAGGGTGCCAAAAATAATTTCGTAGTTGCGAAC
TACCGGTTATGGTAGTATAGCAAATAATAAATGATGTGTATTAAAACCAA
CAGGTGTGGTATTGTTTTTCTGCTTTGGTTCAGAGATGTGGTGTGATTTG
GTGATATACTGACGGGAAACTTATTAAGTCTGTTTATTTGTGCAT
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