DC900404

Overview
NameDC900404
Unique NameDC900404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1138
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:572..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.474e-44
Identity = 95/187 (50.80%), Postives = 124/187 (66.31%), Query Frame = 3
Query:    6 SDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMG--FKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRS-MAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSS 551
            S PPS+ SF R    ++  IL F    GSP  IN YPFFAY+ +P+  +L F LFQPN G  D G+   Y NM  AQVDAV+ AL+A+G  +K V IVV+ETGWP  GDP EVG + +NA+ YNGNLI  + S    TP+ P   +  ++FAL++E++KPGPTSER++GLF PD +  Y +GI  SS
Sbjct:  166 SYPPSATSFRRDLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTDPGSNFHYDNMLFAQVDAVYHALDAVGISYKKVPIVVSETGWPSNGDPQEVGATCDNARKYNGNLIKMMMSKKMRTPIRPECDLTIFVFALFNENMKPGPTSERNYGLFNPDGTPVYSLGIKTSS 352          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.144e-33
Identity = 81/185 (43.78%), Postives = 115/185 (62.16%), Query Frame = 3
Query:    6 SDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSAL-NAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSS 551
            S PPS G+F      T+  I+  L   G+P  +N YP+FAY +DP    L + L   +A    +  G++Y NMFDA +DAV++A+  A G + +E+VV+ETGWP  G     G SVENA AY  NL+ H   + GTP  PGK+V+TYIFA+++E+ KP    E++FG+F+PD+S  Y V  + SS
Sbjct:  142 SYPPSQGTFSEAALPTVGPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAVEKAGGGESLELVVSETGWPSGG--GGYGASVENAAAYINNLVRH---VGGTPRRPGKAVETYIFAMFNENQKPEGV-EQNFGMFQPDMSQVYHVDFTASS 320          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 7.415e-33
Identity = 78/175 (44.57%), Postives = 107/175 (61.14%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPET-LAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAY 527
            S PPSSG F     +  I +FL   G+PF  N YP+FAY+ D      L +   QP     D+G G+ Y ++FDA VD++++AL   G  +V +VV+E+GWP  G     G SVENA+ YN  LI H+RS  GTP  PG +++TYIFA+++E+ KPG   ER+FGLF P+    Y
Sbjct:  142 SFPPSSGVFRDPSGLVPIARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGG---FGASVENARNYNQGLIDHIRS--GTPKRPG-AIETYIFAMFNENRKPGDEVERNFGLFFPNKQPVY 310          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.157e-32
Identity = 77/181 (42.54%), Postives = 110/181 (60.77%), Query Frame = 3
Query:    6 SDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            + PPS G F  +    +  ++ FL    SP  +N YP+F+Y  D     L + LF   +  VD+  G  Y N+FDA +D+V++AL   G   +EIVV+ETGWP  G    VG SVENAK Y  NLI H+++  G+P  PGK+++TYIFA++DE+ K  PT E+ +GLF PD  + Y+V  +
Sbjct:  166 TSPPSQGRFRDEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALFTAQS-TVDNDPGYSYQNLFDANLDSVYAALEKSGGGSLEIVVSETGWPTEG---AVGTSVENAKTYVNNLIQHVKN--GSPRRPGKAIETYIFAMFDEN-KKEPTYEKFWGLFHPDRQSKYEVNFN 339          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.149e-31
Identity = 68/188 (36.17%), Postives = 98/188 (52.13%), Query Frame = 3
Query:    6 SDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFFAYQSDPR-PETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK---PGPTSERSFGLFKPDLSAAYDVGISKSS 551
            S+ PS G F  +  D M  I++FL D+G+PFTIN YPF +  +DP  P   AF       G   +  G  Y N+ DA  D +  +L   GF ++ I+V E GWP  GD N    ++  A+ YN   +   ++  GTP+ PG ++D Y+F L DED K   PG   ER +G+F  D    Y + +   +
Sbjct:  171 SNLPSDGDFRPEIRDLMLNIVKFLSDNGAPFTINIYPFISLYNDPNFPVEFAFF---DGTGTPINDNGRIYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGDKN---ANLMYARRYNQGFMNRQKANKGTPMRPG-AMDAYLFGLIDEDAKSIQPG-NFERHWGIFYIDGQPKYQLSLGSGN 350          

HSP 2 Score: 53.1434 bits (126), Expect = 7.149e-31
Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 2
Query:  623 AAGWCV--PKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVY 883
            A  WC+  P A + D QL  S+ YAC    DC+ +  G +C   N +  + ++A N YYQ S +    C F   + +++++PS   C +
Sbjct:  362 AKKWCILAPNANLQDPQLGPSVSYACDHA-DCTSLGYGSSCGNLN-LAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKF 448          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.150e-31
Identity = 70/185 (37.84%), Postives = 102/185 (55.14%), Query Frame = 3
Query:   15 PSSGSFIR--QDTMRGILQFLKDHGSPFTINPYPFFAYQSDPR-PETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK---PGPTSERSFGLFKPDLSAAYDVGISKSS 551
            PS G F    +D M  I++FL ++G PFT+N YP+ +  ++P  P   AF  F  NA  ++ G G  Y NMFDA  D +  AL   GF ++ I++ E GWP  GD N    +++ AK +N   +AH+    GTP  PG  +D Y+F+L DED K   PG   ER +G+F  D    Y + +  ++
Sbjct:  169 PSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPYISLYTNPDFPVDYAF--FDGNAQPLNDG-GTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSN---ANLDYAKKFNQGFMAHISGGKGTPRRPG-PIDAYLFSLIDEDAKSVQPG-YFERHWGIFTFDGLPKYALNLGTTN 345          

HSP 2 Score: 48.521 bits (114), Expect = 7.150e-31
Identity = 27/87 (31.03%), Postives = 43/87 (49.43%), Query Frame = 2
Query:  632 WCV--PKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYP 886
            WCV  P   + D Q+  ++ YACS G DC+ +  G +C   +    + ++A N YYQ   +    C F   + +T  +PS   C +P
Sbjct:  362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCANLDGK-QNISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTCRFP 446          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.184e-30
Identity = 76/216 (35.19%), Postives = 121/216 (56.02%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSM--AGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQTPSAPVTPSTPKNSKRLHHQNQQQLVGV 638
            S PPS+G+F  + T   M  +L+FL    S F +N +P+F +  +P   +L F LFQ ++   D  TG+ Y N+ D  +D+V  A+  +G+  + + ++ETGWP  GD +E G ++ NA  YN NLI  + +    GTP  PG  + T++F+L++E+ K G  ++R +G+  PD S  YDV    + QTP     P  PK +  + ++ Q   V V
Sbjct:  181 SFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSGSGTQRHWGILHPDGSPIYDVDF--TGQTPLTGFNP-LPKPTNNVPYKGQVWCVPV 393          

HSP 2 Score: 70.0922 bits (170), Expect = 2.752e-11
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  605 PSPKPT------AAGWCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPS 889
            P PKPT         WCVP  G ++ +L+ +L  AC+Q    C+ + PG  C+EP ++  HA++A+N Y+         C F+  A  T+ NP  + C +PS
Sbjct:  374 PLPKPTNNVPYKGQVWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKFPS 475          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.444e-30
Identity = 73/176 (41.48%), Postives = 105/176 (59.66%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV 533
            S PPS+G F +   M  + + L   G+P   N YP+FAY+ +P   +L +  FQP     D   G+ Y ++FDA VDAV++AL   G   V++VV+E+GWP  G       S  NA+ YN  LI H+    GTP    ++++TYIFA+++E+ K G  +ERSFGLF PD S AY++
Sbjct:  164 SFPPSAGVF-KNAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGG---FAASAGNARTYNQGLINHVG--GGTP-KKREALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNI 332          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.309e-29
Identity = 76/186 (40.86%), Postives = 105/186 (56.45%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQTP 560
            S PPSS  F  Q  M  I + L    +P   N YP+FAY  +PR   L +  FQP A  V D+G G+ Y N+F+A VDA+++AL   G   V +VV+E+GWP  G       + ENA+AYN  LI H+    GTP  PG  ++ Y+FA+++E+ KPG  +ER FGLF P+    Y +  +     P
Sbjct:  137 SFPPSSAVFA-QPYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGG---FAATPENARAYNQGLIDHVAH--GTPKKPG-HMEAYVFAMFNENQKPGLETERHFGLFYPNKRPVYHINFAGGRLAP 315          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.309e-29
Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 3
Query:    6 SDPPSSGSFI-RQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV 533
            + PPS+G    +   +R IL FL     P   N YP+FAY+ +PR   L F  F P +  V+   G+ Y N+FDA VD++++AL   G   V++V++E+GWP        G + +NA+AYN  LI H+ +  G+P   G ++++YIFA+++E+LK G   E++FGLFKP++S AY +
Sbjct:  159 TSPPSNGVLADKSGFLRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATFVPGSTTVNDN-GLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWP---SDQGFGATAQNARAYNQGLINHVGN--GSPKKAG-ALESYIFAMFNENLKDGDELEKNFGLFKPNMSPAYAI 328          
The following BLAST results are available for this feature:
BLAST of DC900404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
E1310_ARATH5.474e-4450.80Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E13F_HORVU1.144e-3343.78Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13E_HORVU7.415e-3344.57Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13A_ARATH2.157e-3242.54Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E135_ARATH7.149e-3136.17Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E136_ARATH7.150e-3137.84Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
EA6_ARATH1.184e-3035.19Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13B_HORVU3.444e-3041.48Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13D_HORVU1.309e-2940.86Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13C_HORVU1.309e-2939.55Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionDC900404 VSS Citrus sinensis cDNA clone VS28980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900404 ID=DC900404; Name=DC900404; organism=Citrus sinensis; type=EST; length=1138bp
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCGGGACCGGG
ATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTACATTCAGC
CTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGCAGAGACAG
GGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAAT
GCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGG
AACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCT
ATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAACGTTCATTCGGGCTC
TTCAAGCCAGACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAG
CCAGACTCCATCAGCTCCAGTGACTCCATCAACTCCAAAAAACTCCAAAC
GACTCCATCACCAAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCG
GCATCTCCGATGCACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAA
GGCATCGATTGCAGTCCTATCCAGCCAGGAGGTGCCTGTTTTGAACCAAA
TACAGTAGTATCACATGCTGCTTTTGCCATGAATCTCTACTACCAGACTT
CTGCAAAAAATCCATGGAACTGCGACTTCTCAAAAACGGCAACACTCACA
TCCCAAAATCCCAGTTACAATGGATGTGTCTATCCTAGTGGGGGTACTTG
AAATGGCCAGACGAATTCCCAGTTGATGTTGAATAATGGAATGTTAAGTG
AAATAAAAGTGATGAATCTAATGGTTCCTATTTTATAGATAGCTTTAATT
GTAAAGGTTTCCTCCTCTGATTAAAATGTATCGAGGAAACTCTTTCTTTT
CTTCTCTTTTTTCTTATTTATTAAAATTATTTGTATCCCTATATTGAGAA
TAACATTAGTGGTTNAAATAAACTGTTTGAATATATTC
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