DC900404

Overview
NameDC900404
Unique NameDC900404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1138
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:572..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.808e-29
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 3
Query:   12 PPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV 533
            PPS+G F  Q  M  + + L   G+P   N YP+FAY+ +PR   L +  F+P    V D  TG+    +FDA VDAV +AL   G   V +VV+E+GWP     +    + +NA+AYN  LI H+    GTP  PG +++TYIFA+++E+ K G  +E+ FGLF PD S AY +
Sbjct:  140 PPSNGVFA-QAYMTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRPGTTTVRDPNTGLTSQCLFDAMVDAVVAALERSGAPGVRVVVSESGWP---SASGFAATADNARAYNQGLIDHVGG--GTPKRPG-ALETYIFAMFNENFKTGELTEKHFGLFNPDKSPAYPI 307          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.352e-29
Identity = 72/188 (38.30%), Postives = 99/188 (52.66%), Query Frame = 3
Query:   15 PSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFA-YQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK---PGPTSERSFGLFKPDLSAAYDVGISKSSQT 557
            PS+G F R D    M  I+ FL  + +P TIN YPF + Y +D  P   AF     +     +  GI Y N+FDA  D + S+L A+G  D+ I+V E GWP  GD +    S    + YNG L+  L +  GTPL P   ++ Y+F L DED K   PGP  ER +G+FK D    + + +S   Q+
Sbjct:  173 PSAGRF-RPDIIGQMTQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFF----DGAEPINDNGIDYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKHANAGSA--YRFYNG-LLPRLGTNKGTPLRP-TYIEVYLFGLLDEDAKSIAPGP-FERHWGIFKFDGQPKFPIDLSGQGQS 350          

HSP 2 Score: 49.6766 bits (117), Expect = 6.352e-29
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  632 WCVPKAGISD-AQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSH--AAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYP 886
            WC       D  +L A++DYAC+   DC+ +  G +C   NT+ ++  A++A N+++Q   ++   C F   AT+T+QN S   C +P
Sbjct:  366 WCTFNPEAKDLTKLAANIDYACTFS-DCTALGYGSSC---NTLDANGNASYAFNMFFQVKNQDESACYFQGLATITTQNISQGQCNFP 449          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.496e-29
Identity = 65/162 (40.12%), Postives = 101/162 (62.35%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            I+QFL  +  P   N YP+F + S+     L++ LF    G+  +G    Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++  AGTP  PGKS++TY+FA++DE++K G  +E+ FGLF PD  A Y +  +
Sbjct:  190 IIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALFTQR-GKNSAG----YQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLIDHVKRGAGTPKKPGKSIETYLFAMFDENVKKGEITEKHFGLFSPDQRAKYQLNFN 343          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.496e-29
Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV 533
            I+ FL  H  P   N YP+F +  D  P  L + LF+   G  D+G    Y N+FDA VD+++ A   +G +++EI+V+E+GWP  G P+    ++ENA  Y  NLI H++  AGTP  PG++++TY+FA++DE+ K G  SE+ FGLFKPD    Y +
Sbjct:  185 IIGFLSRHNLPLLANIYPYFGHADDNVP--LPYALFKQQ-GLNDAG----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPSA---TLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQL 333          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.468e-28
Identity = 63/162 (38.89%), Postives = 97/162 (59.88%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            I+QFL  H  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G ++VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E+ FGLF PD  A Y +  +
Sbjct:  122 IIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNS---AATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQLNFN 275          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.468e-28
Identity = 63/162 (38.89%), Postives = 97/162 (59.88%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            I+QFL  H  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G ++VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E+ FGLF PD  A Y +  +
Sbjct:  190 IIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNS---AATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITEKHFGLFSPDQRAKYQLNFN 343          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.224e-28
Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            S PPS+GSF    +  +  I+ FL ++GSP   N YP+F+Y  D +   L + LF  +   V  G+  +Y N+FDA +DA+++AL   G  +++IVV+E+GWP  G       +V+NA+ Y  NLI H++   GTP   G +++TY+FA++DE+ K G  +E+ FGLF P   + Y +  S
Sbjct:  113 SYPPSAGSFSSDASSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALFTASGVVVQDGS-YQYQNLFDALLDALYAALEKAGGSNLKIVVSESGWPSEGG---TAATVDNARTYYKNLINHVK--GGTPRKSG-AIETYLFAMFDENQKTGLETEKHFGLFTPSQESKYQISFS 286          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.499e-28
Identity = 65/162 (40.12%), Postives = 100/162 (61.73%), Query Frame = 3
Query:   57 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            I+QFL  +  P   N YP+F + S+    +L++ LF    G   +G    Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G       ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E+ FGLF PD  A Y +  +
Sbjct:  170 IIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALFTQQ-GTNSAG----YQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGSS---AATIENAQTYYRNLINHVKSGAGTPKKPGKTIETYLFAMFDENDKIGEITEKHFGLFSPDQRAKYQLNFN 323          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.182e-28
Identity = 68/172 (39.53%), Postives = 108/172 (62.79%), Query Frame = 3
Query:    3 QSDPPSSGSF---IRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKP 509
            +S PPS GSF    R   + G+++FL ++ +P  +N Y +FAY ++P+  +L + LF+  +  V  G+ + Y N+FDA VDAV++AL   G   + IVV+E+GWP  G       S++NA+ YN NL+ +++   GTP  PG  ++TY+FA++DE+ K  P  E+ +GLF P
Sbjct:  171 ESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFRSPSVVVQDGS-LGYRNLFDASVDAVYAALEKAGGGSLNIVVSESGWPSSGG---TATSLDNARTYNTNLVRNVKQ--GTPKRPGAPLETYVFAMFDENQKQ-PEFEKFWGLFSP 335          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.729e-27
Identity = 76/181 (41.99%), Postives = 99/181 (54.70%), Query Frame = 3
Query:    3 QSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNA-MGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            Q  PPS G+F  Q  M    Q+L+  G+P   N YP+F+Y  +P    L + LF      V  G+   Y N+FDA VD   SAL    G  +V +VV+E+GWP  G       +  NA+ YN NLI H+    GTP  PG  ++TYIFA+++ED K G  SER FGLF PD S  Y +  S
Sbjct:  163 QGFPPSQGTF-SQGYMAPSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALFTSPGTVVQDGSNA-YQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAGGD---AATAANAQTYNQNLINHVGQ--GTPKRPGP-IETYIFAMFNEDQKTGAESERHFGLFNPDKSPVYPINFS 335          
The following BLAST results are available for this feature:
BLAST of DC900404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
E13A_HORVU3.808e-2941.71Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E138_ARATH6.352e-2938.30Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E13L_TOBAC6.496e-2940.12Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOLLC6.496e-2942.14Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13I_TOBAC2.468e-2838.89Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13G_TOBAC2.468e-2838.89Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13B_VITVI3.224e-2838.67Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13K_TOBAC5.499e-2840.12Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOYBN7.182e-2839.53Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13B_MAIZE2.729e-2741.99Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]

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Properties
Property NameValue
Genbank descriptionDC900404 VSS Citrus sinensis cDNA clone VS28980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900404 ID=DC900404; Name=DC900404; organism=Citrus sinensis; type=EST; length=1138bp
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCGGGACCGGG
ATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTACATTCAGC
CTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGCAGAGACAG
GGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAAT
GCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGG
AACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCT
ATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAACGTTCATTCGGGCTC
TTCAAGCCAGACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAG
CCAGACTCCATCAGCTCCAGTGACTCCATCAACTCCAAAAAACTCCAAAC
GACTCCATCACCAAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCG
GCATCTCCGATGCACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAA
GGCATCGATTGCAGTCCTATCCAGCCAGGAGGTGCCTGTTTTGAACCAAA
TACAGTAGTATCACATGCTGCTTTTGCCATGAATCTCTACTACCAGACTT
CTGCAAAAAATCCATGGAACTGCGACTTCTCAAAAACGGCAACACTCACA
TCCCAAAATCCCAGTTACAATGGATGTGTCTATCCTAGTGGGGGTACTTG
AAATGGCCAGACGAATTCCCAGTTGATGTTGAATAATGGAATGTTAAGTG
AAATAAAAGTGATGAATCTAATGGTTCCTATTTTATAGATAGCTTTAATT
GTAAAGGTTTCCTCCTCTGATTAAAATGTATCGAGGAAACTCTTTCTTTT
CTTCTCTTTTTTCTTATTTATTAAAATTATTTGTATCCCTATATTGAGAA
TAACATTAGTGGTTNAAATAAACTGTTTGAATATATTC
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