DC900404

Overview
NameDC900404
Unique NameDC900404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1138
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:572..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.357e-25
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQ 554
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++    S +
Sbjct:  142 SYPPSQGSF-RNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNAVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVSER 318          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.691e-25
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKS 548
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++    S
Sbjct:  176 SYPPSQGSF-RNDARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVS 350          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.432e-25
Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV--GISKSSQTPSAPVTPST 584
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++  G+S+     SA    +T
Sbjct:  133 SYPPSQGSF-RNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVSERVWDISAETNSTT 321          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.268e-24
Identity = 70/184 (38.04%), Postives = 105/184 (57.07%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTMRG----ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            S PPS+G+F  +D +R     I+ FL    SP   N YP+F Y  +PR  +L + LF  P+    D   G  Y N+FDA +DA++SAL       +E+VV+E+GWP  G       + +N + Y  NLI H++   GTP  P ++++TY+FA++DE+ K  P  E+ FGLF P+    Y++  S
Sbjct:  179 SYPPSAGAF--RDDVRSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVVSESGWPSAG---AFAATFDNGRTYLSNLIQHVK--GGTPKRPNRAIETYLFAMFDEN-KKQPEVEKHFGLFFPNKWQKYNLNFS 352          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.656e-24
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDTM---RGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQ 554
            S PPS GSF R D       I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K  P  E+ FGLF P+    Y++    S +
Sbjct:  168 SYPPSQGSF-RNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK-NPELEKHFGLFSPNKQPKYNLNFGVSER 344          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.162e-24
Identity = 70/183 (38.25%), Postives = 107/183 (58.47%), Query Frame = 3
Query:    6 SDPPSSGSF---IRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGIS 542
            + PPS+G F   +RQ  +  I+ FL  + +P  +N YP+FA  ++   + L + LF  +   V D+G G  Y N+FDA +DA +SAL       +EIVV+E+GWP  G       S++NA+ YN NLI+H++   G+P  P   ++TY+FAL+DED K  P  E+ FGLF  ++   Y +  +
Sbjct:  166 TSPPSNGRFKDDVRQ-FIEPIINFLVTNRAPLLVNLYPYFAIANNADIK-LEYALFTSSEVVVNDNGRG--YRNLFDAILDATYSALEKASGSSLEIVVSESGWPSAGAGQLT--SIDNARTYNNNLISHVK--GGSPKRPSGPIETYVFALFDEDQK-DPEIEKHFGLFSANMQPKYQISFN 339          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.085e-23
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 3
Query:    6 SDPPSSGSFIRQDT---MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVG 536
            S PPS GSF R D    +   + +L   G+P  +N YP+F++  +PR  +L + LF      V  G    Y N+FDA +D+VH+AL+  G   V +VV+E+GWP  G       S +NA+ Y  NLI H+    GTP  P  + + Y+FA++DE+ K  P  E+ FG+F P+    Y  G
Sbjct:  175 SFPPSKGSF-RSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYALFTSPGVMVQDGPN-GYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGS---ATSYDNARIYLDNLIRHVGK--GTPRRPW-ATEAYLFAMFDENQK-SPELEKHFGVFYPNKQKKYPFG 345          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.085e-23
Identity = 67/175 (38.29%), Postives = 100/175 (57.14%), Query Frame = 3
Query:   12 PPSSGSFIRQDTMRGILQ----FLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGR--VDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDE---DLKPGPTSERSFGLFKP 509
            PPS G F  +D  R  LQ    FL +  SP  +N Y +F Y +  R  +L F L QPN+     D    ++Y+N FDA +D+V++AL   G   +++VV+E+GWP +G P   G SV NA+AY  NL  H+ +  G+P    ++++TYIFA++DE      P    E+ +G+F P
Sbjct:  165 PPSRGRF--KDEYRNFLQPVIGFLVNKRSPLLVNIYTYFGYMN--RDVSLQFALLQPNSNNEFTDPNNQLRYLNFFDANLDSVYAALEKSGGGSLDVVVSESGWPTQGGP---GASVPNAEAYVNNLRLHV-NKNGSPKRQ-EAIETYIFAMFDEAPRQTSPNDEYEKYWGMFSP 330          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.556e-22
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  620 TAAGWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT 898
            T+A WCV K G+SD+ LQ +LDYAC  G DC+P  P G+CF P+ V +H  +A+N ++Q   +   +C+F+ TATLT+ +PSY GC +PS  +
Sbjct:   17 TSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPSSAS 109          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.024e-22
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 3
Query:    6 SDPPSSGSFIR--QDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIF 443
            S PP+ G F    +  ++ I+ FL  +G+P   N YP+FAY +D +   LA+ LF    G  D G    Y N+FDA +D++++AL  +G  +++IVV+E+GWP  G     G S++NA  Y  NLI H  S  GTP  PG+S++TY+F
Sbjct:   91 SYPPNDGVFTSDAEPYIKPIINFLVSNGAPLLANVYPYFAYAND-QSIPLAYALFTQQ-GNNDVG----YQNLFDAMLDSIYAALENVGASNLQIVVSESGWPSEGG---AGASIDNAGTYYANLIRHASSGDGTPKRPGESIETYLF 229          
The following BLAST results are available for this feature:
BLAST of DC900404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
E131_SOLTU4.357e-2538.71Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13F_TOBAC5.691e-2539.67Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E133_SOLTU7.432e-2538.38Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13B_HEVBR1.268e-2438.04Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E132_SOLTU1.656e-2438.71Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E13H_TOBAC2.162e-2438.25Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_PEA9.085e-2337.78Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13B_BRACM9.085e-2338.29Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13L3_ARATH1.556e-2247.31Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13B_SOYBN2.024e-2240.54Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]

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Properties
Property NameValue
Genbank descriptionDC900404 VSS Citrus sinensis cDNA clone VS28980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900404 ID=DC900404; Name=DC900404; organism=Citrus sinensis; type=EST; length=1138bp
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCGGGACCGGG
ATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTACATTCAGC
CTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGCAGAGACAG
GGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAAT
GCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGG
AACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCT
ATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAACGTTCATTCGGGCTC
TTCAAGCCAGACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAG
CCAGACTCCATCAGCTCCAGTGACTCCATCAACTCCAAAAAACTCCAAAC
GACTCCATCACCAAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCG
GCATCTCCGATGCACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAA
GGCATCGATTGCAGTCCTATCCAGCCAGGAGGTGCCTGTTTTGAACCAAA
TACAGTAGTATCACATGCTGCTTTTGCCATGAATCTCTACTACCAGACTT
CTGCAAAAAATCCATGGAACTGCGACTTCTCAAAAACGGCAACACTCACA
TCCCAAAATCCCAGTTACAATGGATGTGTCTATCCTAGTGGGGGTACTTG
AAATGGCCAGACGAATTCCCAGTTGATGTTGAATAATGGAATGTTAAGTG
AAATAAAAGTGATGAATCTAATGGTTCCTATTTTATAGATAGCTTTAATT
GTAAAGGTTTCCTCCTCTGATTAAAATGTATCGAGGAAACTCTTTCTTTT
CTTCTCTTTTTTCTTATTTATTAAAATTATTTGTATCCCTATATTGAGAA
TAACATTAGTGGTTNAAATAAACTGTTTGAATATATTC
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