DC900404

Overview
NameDC900404
Unique NameDC900404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1138
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:572..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.654e-22
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  620 TAAGWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSGGT 898
            ++A WCV K G+SD  LQA+LDYAC  G DC+P +P  +CF P+ V SH  +A+N ++Q   ++P +C+F  TAT T+ +PSY GC +P+  +
Sbjct:   17 SSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPTSAS 109          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.985e-21
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   12 PPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDV 533
            PPS+GSF  +    M  ++QFL    +P   N YP+ A+  +P    + + LF  +   V  G    Y N+FD  VDA ++A+   G   V++VV+E+GWP  G       +  NA+ YN +LI H+    GTP  PG +++TYIFA+++E+ K     E+++GLF P++   Y +
Sbjct:  143 PPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGA-YGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGG---TAATPANARFYNQHLINHVG--RGTPRHPG-AIETYIFAMFNENQKDSGV-EQNWGLFYPNMQHVYPI 310          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.960e-17
Identity = 75/219 (34.25%), Postives = 107/219 (48.86%), Query Frame = 3
Query:    3 QSDPPSSGSFIRQD---TMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK--PGPTSERSFGLFKPDLSAAYDVGISKSSQTPSAPVTPSTPK-----NSKRLHHQNQQQL 629
            +S  PSSG F R D   TM  +L FL  H SPF +   PF ++  + +  +L F LF+  A     G    Y N FD   D + SAL  +GF +V+IVV++ GWP  G  N    +   A+A+   LI HL     T  +P   V+TYI +L DED +       ER +G+F  D  A Y+   +  +Q  +  V    PK     N+K L + + + L
Sbjct:  170 ESGRPSSGHF-RADLNKTMIELLSFLTKHHSPFFVTISPFLSFHQN-KNISLDFSLFKETAKAHKDGRKT-YRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDGAENATSLT---AEAFFKGLIVHLEKK--TASLPRPPVETYIESLLDEDQRNLSAGNFERHWGVFTFDGQAKYNFSFNHKNQVNAQNVQYLPPKWCVVNNNKDLSNASARAL 380          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 6.331e-16
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 2
Query:  632 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSG-GT*NGQTNSQLMLNNG 940
            WCV K    D+ LQ ++++AC QG  DC PIQ GG C +P  V   A+F  N YY  + +    C+F+  A LTS NPS   C YPS  G  NG+      +  G
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPSSKGANNGRLADDTSMGAG 145          
BLAST of DC900404 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.011e-13
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  626 AGWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPS 865
            A +C+ K G ++  LQ ++DYAC  G DC+ IQP GAC++PNTV +H   A+N YYQ  A +   CDF+  A+ ++  PS
Sbjct:   19 AAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPS 97          
The following BLAST results are available for this feature:
BLAST of DC900404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
E13L2_ARATH2.654e-2246.24Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
GUB2_HORVU4.985e-2135.23Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E139_ARATH1.960e-1734.25Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13L1_ARATH6.331e-1640.95Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E13L4_ARATH1.011e-1345.00Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]

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Properties
Property NameValue
Genbank descriptionDC900404 VSS Citrus sinensis cDNA clone VS28980 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900404 ID=DC900404; Name=DC900404; organism=Citrus sinensis; type=EST; length=1138bp
CACAATCCGACCCGCCGTCCTCCGGGTCATTCATCCGCCAAGACACTATG
AGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTTACCATCAA
CCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGAGACTCTTG
CCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCGGGACCGGG
ATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTACATTCAGC
CTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGCAGAGACAG
GGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTGTTGAGAAT
GCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCAATGGCTGG
AACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTTTGCTCTCT
ATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAACGTTCATTCGGGCTC
TTCAAGCCAGACCTTTCAGCAGCATATGATGTTGGTATTTCAAAGAGTAG
CCAGACTCCATCAGCTCCAGTGACTCCATCAACTCCAAAAAACTCCAAAC
GACTCCATCACCAAAACCAACAGCAGCTGGTTGGTGTGTGCCCAAGGCCG
GCATCTCCGATGCACAACTGCAGGCAAGTCTTGACTATGCCTGCAGCCAA
GGCATCGATTGCAGTCCTATCCAGCCAGGAGGTGCCTGTTTTGAACCAAA
TACAGTAGTATCACATGCTGCTTTTGCCATGAATCTCTACTACCAGACTT
CTGCAAAAAATCCATGGAACTGCGACTTCTCAAAAACGGCAACACTCACA
TCCCAAAATCCCAGTTACAATGGATGTGTCTATCCTAGTGGGGGTACTTG
AAATGGCCAGACGAATTCCCAGTTGATGTTGAATAATGGAATGTTAAGTG
AAATAAAAGTGATGAATCTAATGGTTCCTATTTTATAGATAGCTTTAATT
GTAAAGGTTTCCTCCTCTGATTAAAATGTATCGAGGAAACTCTTTCTTTT
CTTCTCTTTTTTCTTATTTATTAAAATTATTTGTATCCCTATATTGAGAA
TAACATTAGTGGTTNAAATAAACTGTTTGAATATATTC
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