DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-54
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HS RQFY    + GT+DFIFGNAA VFQ C + AR+P   Q+NMVTAQGR DPNQ TG  IQ C I A+SDL  V   F TYLGRPWK+YSRTVVM+S +  +INPAGW EW G+F +
Sbjct:  366 TLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKKYSRTVVMESYLGGLINPAGWAEWDGDFAL 487          

HSP 2 Score: 71.633 bits (174), Expect = 2.542e-54
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+Y E+ N G GA TS RVKW  +  IT  AEA  +T A  I G +WL STG  +  GL
Sbjct:  483 GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.310e-54
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSG 378
            TLYVHSLRQFY  C I GT+DFIFGNAAA+FQNC+I+AR+P  NQ+N VTA GR DPNQ TGI I  C IGA  DL A   S  T+LGRPWK YSRTV +QS ISDV+ P GW EW+G
Sbjct:  439 TLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADPKSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNG 556          

HSP 2 Score: 65.4698 bits (158), Expect = 3.310e-54
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  356 LGGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +G +   G   LDT+ Y EY N G GADTS RV+WS + ++ +  +A  +T  NF  G TWL  T  PF  GL
Sbjct:  549 VGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDTWLPQTDIPFYGGL 620          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.629e-54
Identity = 75/122 (61.48%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HSLRQFY  C I GTVDFIFGNAA VFQ+C+++ R+P  NQ N +TAQGR DPNQNTGI I  C I    DL++   + +TYLGRPWK YSRTV MQS I +V+ P GW EW+G+F +
Sbjct:  390 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFAL 511          

HSP 2 Score: 68.9366 bits (167), Expect = 5.629e-54
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+YAEY NTG+G+ T++RV W  + VI S  +A  +T  NF+ G  W+  +G P+  GL
Sbjct:  507 GDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.337e-54
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HSLRQFY  C + GTVDFIFGNAA VFQNC+++ R+P PNQ N +TAQGR DPNQNTG  IQ C I    DL++   + +TYLGRPWK YSRTV MQS I   + P GW EW+G+F +
Sbjct:  396 TLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFAL 517          

HSP 2 Score: 66.2402 bits (160), Expect = 7.337e-54
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+YAEY NTG G++T+NRV W  + VI S  +A  +T       + W+  TG P++ GL
Sbjct:  513 GDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.248e-53
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HS RQFY    + GTVDFIFGNAA VFQ C I AR+PN  Q+NMVTAQGR DPNQ TG  IQ C I A+ DL  V   ++TYLGRPWK++SRTVVMQS +   I+P+GW+EW G+F +
Sbjct:  360 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVMQSYLDGHIDPSGWFEWRGDFAL 481          

HSP 2 Score: 70.0922 bits (170), Expect = 1.248e-53
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+Y E+ N G GA TS RVKW  + VIT   EA  +T A  I G +WL ST   +  GL
Sbjct:  477 GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.118e-53
Identity = 79/118 (66.95%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSG 378
            TLYVHSLRQFY  C I GTVDFIFGNAAA+FQNC+I+AR+P   Q+N +TA GR DPNQNTGI I  C I A  DL A   S  T+LGRPWK YSRTV MQS ISD++ P GW EW+G
Sbjct:  434 TLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLDPNQNTGISIINCTIKAAPDLAAEPKSAMTFLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNG 551          

HSP 2 Score: 65.4698 bits (158), Expect = 2.118e-53
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  356 LGGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +G +   G   LDT++Y EY N G GA+T+ RV+W  + ++ + AEA  +T  NF  G TWL  T  PF  GL
Sbjct:  544 VGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL-NLAEAMNFTVYNFTMGDTWLPQTDIPFYGGL 615          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.072e-53
Identity = 96/122 (78.69%), Postives = 105/122 (86.07%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQF+  C+IAGTVDFIFGNAA V Q+CDIHARRPN  Q+NMVTAQGR DPNQNTGIVIQKCRIGATSDL +VKGSF TYLGRPWK YS+TV+MQS ISDVI P GW EW+G F +
Sbjct:  410 TLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFAL 531          

HSP 2 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G     G FAL+TL Y EY NTGAGA T+NRVKW  FKVIT+AAEAQ YTA  FI G  WL STGFPFSLGL
Sbjct:  521 GWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.040e-52
Identity = 74/122 (60.66%), Postives = 88/122 (72.13%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HS RQFY    + GT+DFIFGNAA VFQ C + AR+P   Q+NMVTAQGR DPNQ TG  IQ C I A+ DL  V   F TYLGRPWK+YSRTVVM+S +  +I+P+GW EW G+F +
Sbjct:  366 TLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFAL 487          

HSP 2 Score: 71.633 bits (174), Expect = 1.040e-52
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+Y E+ N G GA TS RVKW  + VIT  AEA ++T A  I G +WL ST   +  GL
Sbjct:  483 GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.129e-51
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQF+  C I GTVDFIFGNAA V QNC I+AR+P   Q+N +TAQ R DPNQNTGI I   R+ A SDL A  GS +TYLGRPWK +SRTV M S I   ++  GW EW+  F +
Sbjct:  414 TLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMDFQKNTITAQNRKDPNQNTGISIHASRVLAASDLQATNGSTQTYLGRPWKLFSRTVYMMSYIGGHVHTRGWLEWNTTFAL 535          

HSP 2 Score: 74.7146 bits (182), Expect = 1.129e-51
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  383 FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            FALDTL+Y EY N+G G+    RV W  ++VI S AEA  +T A FI GS+WL STG  F  GL
Sbjct:  533 FALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAEFIYGSSWLPSTGVSFLAGL 596          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.023e-50
Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TL VHS RQFY  C I GTVDFIFGNAAAVFQNC I  RRP   Q N++TAQGR DP QNTGI I   RI    DL  V G+ +TY+GRPW ++SRTVV+Q+ + +V++P GW  W
Sbjct:  352 TLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCLILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVGTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPW 467          

HSP 2 Score: 75.0998 bits (183), Expect = 6.023e-50
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  383 FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            F LDTLFYAEY+NTG  + T  RV W  F V+  A++A  +T   FIAG+ WL  TG PF+ GL
Sbjct:  473 FGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPFTSGL 536          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME22_SOLLC2.542e-5463.11Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME47_ARATH3.310e-5467.80Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME41_ARATH5.629e-5461.48Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME7_ARATH7.337e-5461.48Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME3_SOLLC1.248e-5362.30Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME25_ARATH2.118e-5366.95Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME3_ARATH6.072e-5378.69Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME21_SOLLC1.040e-5260.66Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME34_ARATH1.129e-5159.84Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME59_ARATH6.023e-5060.34Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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