DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 7.841e-50
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY ++ RQ+Y SC+I GT+DFIFG+AAA+FQNC+I  R+  P Q+N VTAQGR D  Q TG V+  C+I A  DL  VK  +++YLGRPWK YSRT++M+S I +VI+P GW  W
Sbjct:  430 TLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTTGFVVHNCKIAANEDLKPVKEEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRW 545          

HSP 2 Score: 67.781 bits (164), Expect = 7.841e-50
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  380 NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +FA+DTL+YAEY N G+  DT++RVKW  FKVI +  EA  YT   F+ G  W+ ++G P  LGL
Sbjct:  549 DFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGD-WISASGSPVKLGL 611          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.022e-49
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY+HS RQF+  C I+GT+DFIFGNAA VFQNC I  RRP   Q N++TAQGR DP QNTGI I   RI A SDL  V  +++TYLGRPW+ YSR  +M++ I + I+P GW  W
Sbjct:  410 TLYIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPLHGQANIITAQGRGDPFQNTGITIHSSRIIAASDLKPVIRAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPW 525          

HSP 2 Score: 74.3294 bits (181), Expect = 1.022e-49
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  380 NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            NFAL+T+FY EY+N G G+ T  RV+W  F  ITS A A  +T  + IAG +WL +TG PF  GL
Sbjct:  530 NFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.267e-49
Identity = 76/120 (63.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEF 384
            +LY HS RQFY    I GTVDFIFGN+A VFQ+C+I AR+P P QRN VTAQGR +P QNTGI IQ CRI A S          TYLGRPWK YSRTVVMQS I   I+P+GW  WSG F
Sbjct:  343 SLYTHSKRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPLPGQRNFVTAQGRSNPGQNTGIAIQNCRITAES---------MTYLGRPWKEYSRTVVMQSFIGGSIHPSGWSPWSGGF 453          

HSP 2 Score: 67.0106 bits (162), Expect = 2.267e-49
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G F L +LFY EY N+G G+  S RVKWS      +  EA+ +T A+FI G+ WL STG  F  GL
Sbjct:  451 GGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPSTGVSFDPGL 516          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.478e-47
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY+HS RQF  +C I GTVDFIFG+A A+ QNC+I+AR+P   Q+N +TAQ R +P++ TG VIQ   +   S         ETYLGRPW+ +SRTV M+ ++  +++PAGW  WSG F +
Sbjct:  381 TLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEPDETTGFVIQSSTVATAS---------ETYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFAL 493          

HSP 2 Score: 76.2554 bits (186), Expect = 3.478e-47
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G+FAL TL+Y EY NTGAGA  S RVKW  + VI +  EA+ +T  NF+ G+ W+ +TG P + GL
Sbjct:  489 GSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVPVNDGL 554          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.524e-47
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEF 384
            TLY HS RQF+  C I+GT+DF+FG+AAAVFQNC +  R+P PNQ   +TA GR DP ++TG V Q C I    D LAVK + + YLGRPWK YSRT++M + I D + P GW  W G+F
Sbjct:  384 TLYTHSHRQFFRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRKDPRESTGFVFQGCTIAGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVQPQGWQPWLGDF 503          

HSP 2 Score: 60.8474 bits (146), Expect = 4.524e-47
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  374 VGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +G+F L TLFY+E QNTG G+  +NRV W+  K + S  +   +T A +I G  W+   G P++ GL
Sbjct:  500 LGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFTPAQYIQGDDWIPGKGVPYTTGL 565          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.532e-47
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            T+Y H+ RQFY  C+I GTVDFIFGNAA VFQ C+I  RRP   Q+N +TAQGR DPNQNTGI I  C I    +L  +    +T+LGRPWK +S TV+M+S +   INP GW  W+G+
Sbjct:  386 TMYAHAQRQFYRDCVILGTVDFIFGNAAVVFQKCEILPRRPMKGQQNTITAQGRKDPNQNTGISIHNCTIKPLDNLTDI----QTFLGRPWKDFSTTVIMKSFMDKFINPKGWLPWTGD 500          

HSP 2 Score: 67.3958 bits (163), Expect = 4.532e-47
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFS 565
            G +   G+ A DT+FYAEY N+G GA T NRVKW   K   +  EA  +T   FI G+ WL +T  PF+
Sbjct:  493 GWLPWTGDTAPDTIFYAEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFTVKPFIDGNNWLPATKVPFN 561          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.001e-46
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEF 384
            TLY HS RQFY  C I+GT+DF+FG+AAAVFQNC +  R+P  NQ   +TA GR DP ++TG V+Q C I    D LAVK   +TYLGRPWK YSRT++M + I D + P GW  W GEF
Sbjct:  381 TLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKEQSKTYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGEF 500          

HSP 2 Score: 60.4622 bits (145), Expect = 1.001e-46
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  374 VGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +G F L+TLFY+E QNTG GA  + RV W   K + S  E   +T A +I G  W+   G P+ LGL
Sbjct:  497 LGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFTPAQYIQGDAWIPGKGVPYILGL 562          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.002e-46
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY ++ RQ+Y SC+I GTVDFIFG+AAA+FQNCDI  R+  P Q+N VTAQGR D  Q TG VI  C +    DL  VK  F++YLGRPWK +SRTVVM+S I DVI+P GW  W
Sbjct:  425 TLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGRVDKFQTTGFVIHNCTVAPNEDLKPVKAQFKSYLGRPWKPHSRTVVMESTIEDVIDPVGWLRW 540          

HSP 2 Score: 56.6102 bits (135), Expect = 1.002e-46
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  380 NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +FA+DTL YAEY+N G    T+ RVKW  F+V+ +  EA  +T   F+ G  W+ + G P  LGL
Sbjct:  544 DFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFTVGPFLQGE-WIQAIGSPVKLGL 606          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 6.405e-46
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQFY  C ++GTVDFIFG+A  + QNC I  R+PN  Q  MVTAQGR +  ++TG+V+  C I      + +K   + YLGRPWK +SRT++M++ I DVI+PAGW  WSG+F +
Sbjct:  387 TLYVHSHRQFYRDCTVSGTVDFIFGDAKCILQNCKIVVRKPNKGQTCMVTAQGRSNVRESTGLVLHGCHITGDPAYIPMKSVNKAYLGRPWKEFSRTIIMKTTIDDVIDPAGWLPWSGDFAL 508          

HSP 2 Score: 61.2326 bits (147), Expect = 6.405e-46
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFS 565
            G+FAL TL+YAE+ NTG G++ + RVKW   K +T   +A  YT   F+ G TW+  T  P++
Sbjct:  504 GDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT-PQDALLYTGDRFLRGDTWIPQTQVPYT 565          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.346e-46
Identity = 70/116 (60.34%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY HS RQFY  C I GT+DFIFGNAA VFQ+C I  R+P PNQ N +TAQG+ DPNQNTGI+IQK  I    + L       TYLGRPWK +S TV+MQSDI  ++NP GW  W
Sbjct:  402 TLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTITPFGNNLTA----PTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSW 513          

HSP 2 Score: 59.6918 bits (143), Expect = 8.346e-46
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPF 562
            T+FYAEYQN+G GAD S RVKW+ +K   +   A+ +T  +FI G  WL +    F
Sbjct:  522 TIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQF 577          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME13_ARATH7.841e-5056.90Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME33_ARATH1.022e-4958.62Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME16_ARATH2.267e-4963.33Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME6_ARATH3.478e-4750.00Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME21_ARATH4.524e-4755.00Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME46_ARATH4.532e-4755.46Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME28_ARATH1.001e-4656.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME45_ARATH1.002e-4660.34Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME23_ARATH6.405e-4652.46Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME3_PHAVU8.346e-4660.34Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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