DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.732e-45
Identity = 79/122 (64.75%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHSLRQFY+ C + GT+DFIFGNAAAV Q C+++AR+PN NQ+N+ TAQGRDDPNQNTGI I  C++ A +DL+ V  SF+TYLGRPWK YSRTV + S +  +I+PAGW EWSG+F +
Sbjct:  138 TLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFAL 259          

HSP 2 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +   G+FAL TL+Y EY+NTG G++T+ RV W  + V T+  E   +T  NFI GS WL S   P  L L
Sbjct:  249 GWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIPVYLNL 320          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.946e-45
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYVH+ RQFY  C I GTVDFIFGN+A+V Q+C I  RRP   Q+N +TAQGR DPN NTGI I +C I    DL  V     T+LGRPWK +S TV+M S +   I+  GW  W+G+
Sbjct:  384 TLYVHAQRQFYRECTIIGTVDFIFGNSASVLQSCRILPRRPMKGQQNTITAQGRTDPNMNTGISIHRCNISPLGDLTDVM----TFLGRPWKNFSTTVIMDSYLHGFIDRKGWLPWTGD 498          

HSP 2 Score: 67.3958 bits (163), Expect = 6.946e-45
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +   G+ A DT+FY EY+NTG GA T NRVKW   + + S  EA  +T   FI G  WL +T  PF  GL
Sbjct:  491 GWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRFL-STKEANRFTVKPFIDGGRWLPATKVPFRSGL 561          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.054e-45
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSG 378
            TLY HS RQFY  C I GT+D+IFGNAA VFQ C+I ++ P P Q  ++TAQ RD  +++TGI +Q C I A+ DL       ++YLGRPW+ +SRTVVM+S I + I+ +GW +W+G
Sbjct:  366 TLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRDTQDEDTGISMQNCSILASEDLFNSSNKVKSYLGRPWREFSRTVVMESYIDEFIDGSGWSKWNG 483          

HSP 2 Score: 67.0106 bits (162), Expect = 9.054e-45
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G  ALDTL+Y EY N G G++T  RV W  F ++    +A  +TA  FI G  WLGST FP+  G+
Sbjct:  483 GGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM-GYEDAFNFTATEFITGDGWLGSTSFPYDNGI 547          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.179e-44
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQF+  C ++GTVDFIFG+   V QNC+I  R+P  +Q  M+TAQGR D  ++TG+V+Q C I      + VK   + YLGRPWK +SRT++M + I DVI+PAGW  W+G+F +
Sbjct:  389 TLYVHSHRQFFRDCTVSGTVDFIFGDGIVVLQNCNIVVRKPMKSQSCMITAQGRSDKRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDPAGWLPWNGDFAL 510          

HSP 2 Score: 58.151 bits (139), Expect = 1.179e-44
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPF 562
            G+FAL+TL+YAEY+N G G++ + RVKW   K + S  +A  +T A F+ G+ W+     P+
Sbjct:  506 GDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFTPARFLRGNLWIPPNRVPY 566          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.180e-44
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            +LY  S RQFY    I GTVDFIFGN+A VFQ+C++ +R+ + +Q N VTAQGR DPNQNTGI I  CRI          GS +TYLGRPWK+YSRTVVMQS I   I+P+GW  WS  F +
Sbjct:  356 SLYTLSKRQFYRETDITGTVDFIFGNSAVVFQSCNLVSRKGSSDQ-NYVTAQGRSDPNQNTGISIHNCRI---------TGSTKTYLGRPWKQYSRTVVMQSFIDGSIHPSGWSPWSSNFAL 467          

HSP 2 Score: 66.2402 bits (160), Expect = 1.180e-44
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 2
Query:  380 NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            NFAL TL+Y E+ N+G G+  S RV W+ +    +  EAQ +T + FI G++WL STG  F  GL
Sbjct:  464 NFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPSTGVVFDSGL 528          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.435e-44
Identity = 67/117 (57.26%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS 375
            TL VHS RQFY  C I GTVDFIFGNAA VFQNC I  R P   Q N++TAQGR D  QNTGI I    I    DL  V  S +TY+GRPW  YSRTVV+++ I  V++P GW  W+
Sbjct:  356 TLMVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCIILPRLPLKGQANVITAQGRTDLFQNTGISIHNSIIIPAPDLKPVVRSVKTYMGRPWMMYSRTVVLKTYIDSVVSPVGWSPWT 472          

HSP 2 Score: 68.1662 bits (165), Expect = 4.435e-44
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  383 FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFS 565
            + LDTLFYAEY+N G  + T  RV+W  F V++ A++A  ++   FIAG+ WL  +G PF+
Sbjct:  477 YGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFSVGKFIAGTAWLPGSGIPFT 537          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.764e-44
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVH+ RQFY +C ++GT+DF+FG+A AVFQNC+   RRP  +Q+ +VTAQGR D  + TGIVI   RI   +  L VK     +LGRPWK +SRT++M ++I DVI+P GW +W+  F +
Sbjct:  521 TLYVHTHRQFYRNCRVSGTIDFVFGDAKAVFQNCEFVIRRPMEHQQCIVTAQGRKDRRETTGIVIHNSRITGDASYLPVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFAL 642          

HSP 2 Score: 57.7658 bits (138), Expect = 5.764e-44
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 2
Query:  383 FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFS 565
            FAL+TLFY EY+N G G+    RV+W   K I+  A A+ +   NF+ G+TW+  T  P++
Sbjct:  640 FALNTLFYTEYRNRGRGSGQGRRVRWRGIKRISDRA-AREFAPGNFLRGNTWIPQTRIPYN 699          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.831e-43
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   28 LYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            LY H  RQFY  C I GTVDFI GNAAAVFQ C I AR+PN  Q N +TAQ R+  +  +G  IQ C I A+SDL     + +TYLGRPW+ +S   V+QS I D+++PAGW  W GE
Sbjct:  345 LYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSNFITAQSRETKDDKSGFSIQNCNITASSDL--DTATVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWTPWEGE 460          

HSP 2 Score: 67.0106 bits (162), Expect = 2.831e-43
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G TWL  +  P+  GL
Sbjct:  459 GETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKESRIPYKSGL 524          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.831e-43
Identity = 65/118 (55.08%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   28 LYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            LY HS RQFY  C I GTVDFI GNA AVFQ C I AR+P   Q N++TAQ R   +  +G  IQKC I A+SDL     + +TYLGRPW+ +S   VMQS I D+++PAGW  W GE
Sbjct:  345 LYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSRAFKDIYSGFTIQKCNITASSDLDTT--TVKTYLGRPWRIFSTVAVMQSFIGDLVDPAGWTPWEGE 460          

HSP 2 Score: 68.5514 bits (166), Expect = 2.831e-43
Identity = 33/66 (50.00%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G TWL  T  P+  GL
Sbjct:  459 GETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKETRIPYESGL 524          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.387e-42
Identity = 63/118 (53.39%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   28 LYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            LY HS RQFY  C I GTVDFI GNA AVFQ C I AR+P   Q N++TAQ R   +  +G  IQ C I  +SDL     + +TYLGRPW+R+S   V+QS I D+++PAGW  W GE
Sbjct:  318 LYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSRATKDVKSGFSIQNCNITTSSDL--DTATVKTYLGRPWRRFSTVAVLQSFIGDLVDPAGWTPWKGE 433          

HSP 2 Score: 66.6254 bits (161), Expect = 1.387e-42
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G TWL  +  P+  GL
Sbjct:  432 GETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGETWLKESRIPYESGL 497          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME_ACTDE2.732e-4564.75Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME24_ARATH6.946e-4554.62Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME12_ARATH9.054e-4551.69Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME58_ARATH1.179e-4451.64Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME35_ARATH1.180e-4457.38Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME60_ARATH4.435e-4457.26Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME43_ARATH5.764e-4451.64Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME42_ARATH2.831e-4354.24Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME19_ARATH2.831e-4355.08Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME30_ARATH1.387e-4253.39Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
back to top