DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.990e-42
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY HS RQFY  C + GT+DFIFG+AA VFQ C I  R+P  NQ N +TAQG+ DPNQ++G+ IQ+C I A  +++A      TYLGRPWK +S TV+M++ I  V+ P+GW  W
Sbjct:  409 TLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISANGNVIA-----PTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSW 519          

HSP 2 Score: 57.7658 bits (138), Expect = 3.990e-42
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTG 553
            ++ Y EY+NTG G+D + RVKW+ +K + S AEA  +T A  + G+ W+ +TG
Sbjct:  528 SIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATG 580          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.849e-42
Identity = 67/117 (57.26%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRI-GATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLYVHS RQF+  C I GTVDFIFGNAAAV QNC I AR P PN  N +TAQ R +PNQ TGIVI    + GA    L   G  +TYLGRPW+ Y+RTVV+ + +  +I P GW +W
Sbjct:  295 TLYVHSGRQFFRECDIYGTVDFIFGNAAAVLQNCRIFARNP-PNGVNTITAQSRFNPNQTTGIVIHNSVVKGAPGVQL---GGVKTYLGRPWRSYARTVVIGTYLDTLIEPNGWIDW 407          

HSP 2 Score: 67.0106 bits (162), Expect = 8.849e-42
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  386 ALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            AL TL+Y EYQN+G G+ T NRV W+ F VI+   EA+ +T   FI  ++WL  T  PF++ L
Sbjct:  412 ALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFTLPKFIDSASWLPPTKVPFTINL 474          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.403e-41
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQFY  C I GTVDFIFGNAA V QNC+I AR+P PN+ N +TAQGR DPNQ+TGI+I  CR+ A SDL  V+ S +T+LGRPWK+YSRTV +++ +  +INPAGW EWSG+F +
Sbjct:  329 TLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFAL 449          

HSP 2 Score: 86.6557 bits (213), Expect = 9.044e-17
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G M   G+FAL+TL+YAEY NTG G+ T+NRVKW  + V+TS ++   +T  NFIAG++WL +T  PF+ GL
Sbjct:  439 GWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.558e-41
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS 375
            TLYVH+ RQFY  C I GTVDFIFGN  AV QNC +  R+P  NQ  MVTAQGR +P Q   IV+Q C I   +D  ++    +TYLGRPWK YSRT++MQS I   I P GW  W+
Sbjct:  187 TLYVHTYRQFYRDCTITGTVDFIFGNGEAVLQNCKVIVRKPAQNQSCMVTAQGRTEPIQKGAIVLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEGWAPWN 303          

HSP 2 Score: 51.2174 bits (121), Expect = 2.558e-41
Identity = 25/68 (36.76%), Postives = 34/68 (50.00%), Query Frame = 2
Query:  374 VGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG-STWLGSTGFPFSLGL 574
            + NF  DT +YAEYQN G GA    R+ W  F+   +   AQ +TA  +I     WL     P+  G+
Sbjct:  304 ITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.058e-40
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEF 384
            TLY HS RQ+Y +C + GTVDFIFG    VFQ C I  R+P PNQ N +TA+G  + NQNTGI I +C I    ++ A      TYLGRPWK +S+TV+MQS I   +NPAGW  W+  +
Sbjct:  789 TLYTHSNRQYYRNCDVTGTVDFIFGAGTVVFQGCSIRPRQPLPNQFNTITAEGTQEANQNTGISIHQCTISPNGNVTAT-----TYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTY 903          

HSP 2 Score: 51.2174 bits (121), Expect = 6.058e-40
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG-STWL 541
            T+FY EY+N+G G+D S RVKW+ +K I+S  EA  +T   F+ G   W+
Sbjct:  909 TIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWI 958          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 7.698e-40
Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS RQFY  C + GTVDFIFGNAAAV QNC+I ARRP  ++ N +TAQGR DPNQNTGI+I   R+ A SDL  V GS +TYLGRPW++YSRTV M++ +  +I+P GW EW G F +
Sbjct:  331 TLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPR-SKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFAL 451          

HSP 2 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +   GNFAL TLFYAE+QNTG GA TS RV W  F+V+ SA+EA  +T   F+AG +W+ S+  PF+ GL
Sbjct:  441 GWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.240e-39
Identity = 77/126 (61.11%), Postives = 93/126 (73.81%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVK-GSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCIGHI 399
            TLY H++RQFY  C I+GTVDFIFG+A  VFQNC I A++  PNQ+N +TAQGR DPN+ TGI IQ C I A SDL A    S  TYLGRPWK YSRTV+MQS +S+VI P GW EW+G+F +  +
Sbjct:  337 TLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPTGISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSL 462          

HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFS 565
            G +   G+FAL++LFY EY N G GA   +RVKW  ++V   + +A+ YT A FI G+ WL STG  ++
Sbjct:  449 GWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYT 517          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.511e-39
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   28 LYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            LYVHS RQF+  C I GTVDFIFGNAA + Q+C+I+AR+P   Q+  +TAQ R DPNQNTGI I  C++ AT DL A KGS+ TYLGRPWK YSR V M SD+ D I+P GW EW+G F +
Sbjct:  404 LYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFAL 524          

HSP 2 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +   G FALD+L+Y EY N G G+    RVKW  + VITS  EA  +T A FI+GS+WL STG  F  GL
Sbjct:  514 GWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.511e-39
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HS+RQF+  CII GTVDFIFG+A AVFQ+C I A++  PNQ+N +TAQGR DPN+ TG  IQ   I A +DLL    +  TYLGRPWK YSRTV MQ+ +SD INP GW EW+G F +
Sbjct:  343 TLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGRKDPNEPTGFTIQFSNIAADTDLLLNLNTTATYLGRPWKLYSRTVFMQNYMSDAINPVGWLEWNGNFAL 464          

HSP 2 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  356 LGGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            +G +   GNFALDTL+Y EY N+G GA    RVKW  + V+ ++AEA  +T +  I G+ WL STG  F  GL
Sbjct:  453 VGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.738e-37
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            T+YVHS +QFY  C I GTVDFIFG+A+ VFQNC ++ARRPNPNQ+ + TAQGR++  + TGI I   RI A  DL+ V+ +F+ YLGRPW+ YSRTV+M+S I D+++PAGW +W  +F +
Sbjct:  336 TIYVHSHKQFYRECDIYGTVDFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGRENSREPTGISIISSRILAAPDLIPVQANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFAL 457          

HSP 2 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +    +FAL+TL+Y EY N G G++ +NRV+W  FK I +  EA  ++   FI G+ WL ST  PF+L L
Sbjct:  447 GWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME1_ARATH3.990e-4253.45Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME38_ARATH8.849e-4257.26Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME2_CITSI1.403e-4163.93Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME_PETIN2.558e-4155.56Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME26_ARATH6.058e-4051.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME17_ARATH7.698e-4062.30Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_PRUPE2.240e-3961.11Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME61_ARATH8.511e-3961.16Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME32_ARATH8.511e-3960.66Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME40_ARATH2.738e-3756.56Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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