DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.003e-36
Identity = 63/130 (48.46%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI----HARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLL----AVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY H LRQFY +C I G VDFIFGN+AAVFQ+C+I        P   ++N VTAQGR DP+Q+TG V   C I  T + +    A     + +LGRPWK YSRTV +  ++  +I P GW  WSG+F +
Sbjct:  371 TLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFAL 500          

HSP 2 Score: 48.9062 bits (115), Expect = 1.003e-36
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTW 538
            G+FAL TL+Y E +NTG G+D S RV WS+            Y+ ANFI    W
Sbjct:  496 GDFALKTLYYGESKNTGPGSDRSQRVSWSS---QIPDEHVHVYSVANFIQADEW 546          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.150e-35
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLYVHS +QFY  C I GT+DFIFGNAA VFQN  ++AR+PNP  +   TAQ R+  +Q TGI I  CRI A  DL+ VK +F+ YLGRPW++YSRTV+++S I D+I+PAGW E   +F +
Sbjct:  350 TLYVHSAKQFYRECDIYGTIDFIFGNAAVVFQNSSLYARKPNPGHKIAFTAQSRNQSDQPTGISILNCRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFAL 471          

HSP 2 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLG 571
            G + G  +FAL+TL+Y EY N G GA+ + RV W  F+ I +  EA  +T   FI GSTWL STG PFSLG
Sbjct:  461 GWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPFSLG 531          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.962e-35
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY H++RQFY  C I GTVDFIFG+   VFQNC I A+R  PNQ+N +TAQGR D NQ +G  IQ   I A +DL+    +  TYLGRPWK YSRTV +++++SDV+ P GW EW+ +F +
Sbjct:  341 TLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLPNQKNTITAQGRKDVNQPSGFSIQFSNISADADLVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFAL 462          

HSP 2 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            G +    +FALDTLFY E+ N G G+  S+RVKW  + V  ++ +A  +T + FI G+ WL STG  FS GL
Sbjct:  452 GWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 523          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.115e-35
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDD-PNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYV++ RQFY + +++GTVDFIFG +A V QN  I  R+ +P Q N VTA G +       GIV+  CRI    +L A K + ++YLGRPWK+++ TV++ ++I D+I P GW EW GE
Sbjct:  407 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGE 526          

HSP 2 Score: 52.373 bits (124), Expect = 3.115e-35
Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            T  Y E+ N G GA T+ R  W   KV  SAAE +TYT AN++  + W+     P  LGL
Sbjct:  531 TAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.521e-34
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDP-NQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYV++ RQFY + +++GTVDFIFG +A V QN  I  R+ N  Q N VTA G +       GIV+Q CRI     L A +   E+YLGRPWK++S TV++ S+I DVI P GW  W GE
Sbjct:  414 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGE 533          

HSP 2 Score: 50.0618 bits (118), Expect = 1.521e-34
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 2
Query:  404 YAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            Y EY N G GA T+ RV W   K+  SAAE   +T AN++    W+     P +LGL
Sbjct:  541 YVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.581e-34
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQ-NTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYV++ RQFY + +++GTVDFIFG +A V QN  I  R+ +P Q N VTA G +       GIV+  CRI A  +L A + + ++YLGRPWK ++ T V+ ++I D+I P GW EW GE
Sbjct:  403 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGE 522          

HSP 2 Score: 51.2174 bits (121), Expect = 2.581e-34
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            T  Y E+ N G GA+T+ RV W+  K+  SAAE + +T AN++  + W+     P  LGL
Sbjct:  527 TATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.377e-34
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRD-DPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYV++ RQFY +C+++GTVDFIFG +A V QN  I  R+ +  Q N VTA G +       GIV+Q CRI     L   + +  TYLGRPWK++S TV+M +++ D+I P GW  W GE
Sbjct:  407 TLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGE 526          

HSP 2 Score: 49.6766 bits (117), Expect = 4.377e-34
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 2
Query:  404 YAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            Y EY N G GA  + RV W+  KV  SAAE   +TAAN++    W+     P ++GL
Sbjct:  534 YVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.643e-33
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQR-NMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY  +LRQFY  C I GT+DFIFGNAAAVFQ+C+I  RRP+  +  N++ A GR D  QNTG  +  CRI   SDL  VK  + +YLGRPW++YSR +VM+S I D I   GW  W
Sbjct:  326 TLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGW 442          

HSP 2 Score: 30.4166 bits (67), Expect = 1.643e-33
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 2
Query:  377 GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVI 478
            G+  L TL++ E++N G  A  S RV W  F  I
Sbjct:  446 GDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSI 479          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.737e-33
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSG 378
            TLYV S RQFY  C I+GT+DF+FG    VFQNC +  R P   Q+ +VTA GR+  N  + +V Q         L +V     +YLGRPWK+YS+ V+M S I  +  P G+  W G
Sbjct:  260 TLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMG 376          

HSP 2 Score: 57.7658 bits (138), Expect = 4.737e-33
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 2
Query:  359 GGMNGVGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTA-----ANFIAGSTWLGSTGFPFSLG 571
            G M  +G+   +T  Y EY N G GADT+ RVKW   KV+TS   A+ Y        N  A  TW+  +G P+SLG
Sbjct:  370 GYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.344e-33
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HSLRQFY  C I GT+DFIFGN AAV QNC I+ R P P Q+  +TAQGR  PNQNTG VIQ   + AT           TYLGRPWK YSRTV M + +S ++ P GW EW G F +
Sbjct:  369 TLYAHSLRQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQNSYVLATQ---------PTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFAL 481          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME51_ARATH1.003e-3648.46Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME39_ARATH1.150e-3556.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME44_ARATH1.962e-3554.92Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME37_ARATH3.115e-3547.50Probable pectinesterase/pectinesterase inhibitor V... [more]
PME5_ARATH1.521e-3450.00Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRANA2.581e-3447.50Probable pectinesterase/pectinesterase inhibitor O... [more]
PME4_ARATH4.377e-3447.50Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME54_ARATH1.643e-3354.70Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_MEDSA4.737e-3344.07Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME22_ARATH5.344e-3356.56Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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