DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGW 363
            TLY +S RQFY  C I GTVDFIFG AAAVFQ C I AR+P   Q N++TAQ R++    +G   QKC I A+SDL  +KG+ +T+LGRPW+ +SR V M+S I DVI+ AGW
Sbjct:  174 TLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.123e-31
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQ-NTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGE 381
            TLYV++ RQFY + +++GTVDFI G +A V QN  I  R+ +P Q N VTA G+        GIV+  CRI A  +L A + + ++YLGRPWK ++ T V+ ++I D+I P GW EW GE
Sbjct:  390 TLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGE 509          

HSP 2 Score: 45.8246 bits (107), Expect = 1.123e-31
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 574
            T  Y E+ N G GA+ + RV W+  K+  SAAE + +T AN++  + W+        LGL
Sbjct:  514 TATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.963e-28
Identity = 60/131 (45.80%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI-----HARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLL----AVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCI 390
            TLY HSLRQFY  C I G VDFIFGN+AAVFQ+CDI     H++       N +TA GR D +Q+TG V   C I  T + +    A     + +LGRPWK +SRTV +  ++  +I+P GW  W+G+F +
Sbjct:  421 TLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFAL 551          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.376e-23
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY H  R +Y  C I G+VDFIFGNA ++++ C +HA     ++   VTAQGR    ++TG    KC++  T  L         YLGR W  +SR V   + + ++I P GWY W
Sbjct:  225 TLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHA---IADKLGAVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNW 328          

HSP 2 Score: 40.0466 bits (92), Expect = 3.376e-23
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            T+FY +Y+ TGAGA+   RV W+  + +T   EA+ + +  FI GS W+
Sbjct:  336 TVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.281e-21
Identity = 50/128 (39.06%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCIGHI 399
            TLY    R +Y  C+I+G +DFIFG A ++F+ C +  R    P       +TAQGRD P    G V + C          V GS +  LGR WK YSR +  +S  SD I P GW  W  +   GHI
Sbjct:  170 TLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDC---------TVMGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHI 288          

HSP 2 Score: 32.7278 bits (73), Expect = 2.281e-21
Identity = 19/53 (35.85%), Postives = 23/53 (43.40%), Query Frame = 2
Query:  404 YAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPF 562
            + E+  TG GADTS RV W T     S  +   +T   FI    WL      F
Sbjct:  290 FVEFGCTGVGADTSKRVPWLT---KASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.957e-20
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TL   +   ++ +C I G  DFI G+A+++++ C +H+  PN      +TAQ R    + +G     C++          GS  T+LGRPW  YSR V   S  S+V+ P GW +W
Sbjct:  176 TLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPN---NGSITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQW 279          

HSP 2 Score: 40.4318 bits (93), Expect = 6.957e-20
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 2
Query:  392 DTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            +T++Y EY+  G GAD   RV+WS      S  EA  + + +FI G  WL
Sbjct:  286 NTVYYGEYKCYGPGADREQRVEWSK---QLSDEEATVFLSKDFIGGKDWL 332          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.175e-19
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   16 TKXTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            ++ TL+  +   ++  C I G VDFIFGNA +++Q+CDIH+      +   + A  RD   ++TG     C I  T  +         YLGR W  YSRTV     I+D+I P GW +W
Sbjct:  219 SQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHS---TAKRYGAIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDW 325          

HSP 2 Score: 31.187 bits (69), Expect = 1.175e-19
Identity = 17/48 (35.42%), Postives = 23/48 (47.92%), Query Frame = 2
Query:  398 LFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            + + EY   G GA+   RV WS  K +T   E + +    FI G  WL
Sbjct:  334 VMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.326e-17
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI--HARRPNPNQR---NMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGW 363
            TL+    R ++  C I G++DFIFGNA +++Q+C I   A + +P  +     VTA GR   ++N+G     C IG T            +LGR W+ YSR V + + ++DVI P GW
Sbjct:  224 TLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTG---------HVWLGRAWRPYSRVVFVSTTMTDVIAPEGW 332          

HSP 2 Score: 31.187 bits (69), Expect = 1.326e-17
Identity = 19/51 (37.25%), Postives = 23/51 (45.10%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAAN--FIAGSTWL 541
            T+FY EY  +G GAD S R  +     +    E Q     N  FI G  WL
Sbjct:  343 TIFYGEYNCSGPGADMSKRAPY-----VQKLNETQVALLINTSFIDGDQWL 388          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.965e-17
Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   46 RQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQR---NMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            R  + +C I G +DFIFG+  +V+++C I+A       +     +TAQGR   +  +G V  +          +V GS   YLGR +  +SR + +Q+D+S V++P GWY W
Sbjct:  131 RHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRG---------SVSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSW 233          

HSP 2 Score: 32.7278 bits (73), Expect = 4.965e-17
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 2
Query:  404 YAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGS 547
            YAE +  GAG+D S RV W     + S    Q ++ +NFI    W+ +
Sbjct:  244 YAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR--RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCIGHIVLCRVSKHRCW 432
            TL+    R ++  C I G VDFI G+  +++Q+C I     +  P     +TAQGR + N   G V   C          V G  + YLGR W+ YSR +   S+++DV++P GW+EW+ +   G+      ++H C+
Sbjct:  162 TLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINC---------LVHGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQ---GYEKQLTYAEHGCF 287          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME56_ARATH5.908e-3256.64Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_BRACM1.123e-3146.67Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME64_ARATH3.963e-2845.80Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME53_ARATH3.376e-2339.66Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME10_ARATH2.281e-2139.06Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME11_ARATH6.957e-2033.62Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.175e-1936.13Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME8_ARATH1.326e-1736.44Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME52_ARATH4.965e-1733.93Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME55_ARATH3.480e-1632.61Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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