DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR--RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGEFCIGHIVLCRVSKHRCW 432
            TL+    R ++  C I G VDFIFG   +++Q+C I     +  P     +TAQGR +P    G +   C          V G+   +LGRPW+ YSR +   S+++DV+ P GW  W+    +GH      ++H C+
Sbjct:  167 TLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINC---------LVYGTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWN---FVGHENQLVFAEHGCF 292          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.498e-15
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TLY+H  +Q+   C I G+VDFIFGN+ A+ ++C IH +      +  +TAQ R    ++TG V  +C I           S   YLGRPW  + R V+  + +   I   GW+ W
Sbjct:  145 TLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCK-----SQGFITAQSRKSSQESTGYVFLRCVITGNGQ------SGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNW 249          

HSP 2 Score: 22.3274 bits (46), Expect = 1.498e-15
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  404 YAEYQNTGAGADTSNRVKWS 463
            + EY+  G G+ +S RV WS
Sbjct:  260 FYEYRCFGPGSCSSERVPWS 279          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.280e-15
Identity = 41/120 (34.17%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHA---RRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS 375
            TL+ +  R +Y  C I G++DFIFG A ++F NC+I     +R  P     +TA  R+   + TG V  + +         V G  E YLGR    YSR +  ++ +S  + P GW  WS
Sbjct:  176 TLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKP--YGSITAHHRESAEEKTGYVFIRGK---------VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWS 284          

HSP 2 Score: 32.3426 bits (72), Expect = 3.280e-15
Identity = 16/48 (33.33%), Postives = 29/48 (60.42%), Query Frame = 2
Query:  398 LFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            L++ EY+  G GA+   R  W+  K +T   E +++ + +FI G++WL
Sbjct:  292 LYHGEYKCHGPGAERQKRSDWA--KDLTK-QEVESFLSIDFIDGTSWL 336          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.216e-14
Identity = 39/119 (32.77%), Postives = 56/119 (47.06%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            TL+    R +Y  CII+G +DFIFG   ++F+ C ++         N    +TA  R  P+   G V   C          V G  +T LGR W   +R +  +S +SDV+ P GW  W
Sbjct:  165 TLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDC---------TVTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAW 274          

HSP 2 Score: 32.3426 bits (72), Expect = 1.216e-14
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 2
Query:  398 LFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLG 571
            L + E   TGAGADTS RV W   K + S +E   + + +FI    W+  + FP   G
Sbjct:  283 LTFVEAGCTGAGADTSQRVPW--LKKL-SLSEVDGFASVSFIDQDGWI--SRFPIEGG 335          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFG-NAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS 375
            TL   +  Q Y +  I G VDFIFG +A A FQN DI      P   + +TA GR      +  VI K  + A       +G++  YLGRPW  Y+R V  Q+ +++VIN  GW EWS
Sbjct:  163 TLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVE-GPTSAS-ITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWS 276          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.581e-14
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1
Query:   52 FYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 369
            F+  C I GT DFIFG  A+++ N  +HA     +   ++TAQGR    +  G     C++  T   +        YLGR W  + + V   ++++ V+NP+GW E
Sbjct:  207 FFKDCYIEGTYDFIFGRGASLYLNTQLHA---VGDGLRVITAQGRQSATEQNGYTFVHCKVTGTGTGI--------YLGRSWMSHPKVVYAFTEMTSVVNPSGWRE 301          

HSP 2 Score: 30.0314 bits (66), Expect = 7.581e-14
Identity = 16/49 (32.65%), Postives = 23/49 (46.94%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            T+FY EY+  G G+    RV ++         E   +    +I GSTWL
Sbjct:  310 TVFYGEYKCFGPGSHLEKRVPYTQ---DIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFG-NAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS 375
            TL   +  Q Y    I G VDFIFG +A A F  CDI      P+  + +TA GR   + ++  VI K  + A        G++  YLGRPW +Y+R    ++ ++DVIN  GW EWS
Sbjct:  162 TLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLE-GPSSAS-ITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRPWSQYARVCFQKTSMTDVINHLGWTEWS 275          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1
Query:   46 RQFYTSCIIAGTVDFIFGNAAAVFQNCDIH--ARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            R F+  C I G++DFIFGN  +++Q+C I+  A+         +TAQGR   ++ +G     C+I          GS E  LGR W  Y+  V   + +S +I P GW  W
Sbjct:  231 RHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNW 332          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   25 TLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGW 363
            TL     R F+  C I G++DFIFGN  +++++C +H+     N    +TA G+D     TG V   C+I          GS   +LGR W+ Y+R +  ++ +S V++  GW
Sbjct:  175 TLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHS-IAKENTIGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGW 277          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 8.397e-12
Identity = 29/106 (27.36%), Postives = 49/106 (46.23%), Query Frame = 1
Query:   52 FYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 369
            F+  C I GT DFIFG+  +++    ++          ++TA       + +G     C++  T   +        YLGR W  + + V   +D+S V+NP+GW E
Sbjct:  184 FFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGIR---VITAHAGKSAAEKSGYSFVHCKVTGTGTGI--------YLGRSWMSHPKVVYAYTDMSSVVNPSGWQE 278          

HSP 2 Score: 36.1946 bits (82), Expect = 8.397e-12
Identity = 18/49 (36.73%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            T+FY EY+ TG G+    RVK++         EA+ + +  +I GS+WL
Sbjct:  287 TVFYGEYKCTGTGSHKEKRVKYTQ---DIDDIEAKYFISLGYIQGSSWL 332          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME29_ARATH7.752e-1632.61Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME31_ARATH1.498e-1535.34Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME67_ARATH3.280e-1534.17Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME66_ARATH1.216e-1432.77Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PME_ASPAC2.494e-1439.83Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME50_ARATH7.581e-1432.08Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME_ASPTU9.476e-1438.14Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME15_ARATH1.616e-1334.23Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME14_ARATH6.142e-1332.74Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME63_ARATH8.397e-1227.36Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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