DC900401

Overview
NameDC900401
Unique NameDC900401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:981..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.412e-11
Identity = 30/106 (28.30%), Postives = 49/106 (46.23%), Query Frame = 1
Query:   52 FYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 369
            F+ +C I GT DFIFG  A+++    +HA         ++ A  R    +  G     C++      +        YLGR W  + + V   +++S V+NP+GW E
Sbjct:  207 FFKNCYIEGTYDFIFGRGASLYLTTQLHAVGDG---LRVIAAHNRQSTTEQNGYSFVHCKVTGVGTGI--------YLGRAWMSHPKVVYSYTEMSSVVNPSGWQE 301          

HSP 2 Score: 30.8018 bits (68), Expect = 1.412e-11
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = 2
Query:  395 TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 541
            T+FY EY  TG G+  + RV  +         EA  +    +I GS WL
Sbjct:  310 TVFYGEYMCTGPGSHKAKRVAHTQ---DIDNKEASQFLTLGYIKGSKWL 355          
BLAST of DC900401 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 32/109 (29.36%), Postives = 55/109 (50.46%), Query Frame = 1
Query:   46 RQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 372
            R ++  C I G++DFIFGN  +++++C++H+     ++   + A GR  P + TG     CR+  T  L         Y+GR   +YSR V   +    ++   GW +W
Sbjct:  207 RHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDW 303          
The following BLAST results are available for this feature:
BLAST of DC900401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME49_ARATH1.412e-1128.30Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME68_ARATH9.806e-1129.36Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionDC900401 VSS Citrus sinensis cDNA clone VS28976 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900401 ID=DC900401; Name=DC900401; organism=Citrus sinensis; type=EST; length=576bp
GTGACATGCTAGCATACCAAGNACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGGAATTTTGCATTGGACACATTG
TTTTATGCAGAGTATCAAAACACAGGTGCTGGTGCTGACACATCGAATAG
GGTGAAATGGAGCACATTCAAGGTGATTACTAGTGCAGCTGAGGCTCAAA
CTTATACAGCTGCGAATTTTATTGCAGGGAGTACTTGGCTTGGCTCCACT
GGGTTTCCTTTCTCTCTTGGTCTGTG
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