DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAKH (Cell division control protein 2 homolog OS=Plasmodium knowlesi (strain H) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.483e-39
Identity = 83/196 (42.35%), Postives = 125/196 (63.78%), Query Frame = 2
Query:   11 ALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFD-PNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            ALKK+R +  +        REI IL+ L H N++KL  ++ ++    L LVF +++ DL  L+   +        K ++ QLLSG+ +CH + VLHRD+K  NLLI+ +G LKIADFGLA  F  P  K+  T  VVTLWYR P++L+G+  Y   +D+WS GCI AE++ G+P+ PG +E +QL +I+++ G+P+
Sbjct:   30 ALKKIRLEKEDEGIPSTAIREISILKELKHSNIVKLYDVIHTKKR--LILVFEHLDQDLKKLLDVCDGGLESVTAKSFLLQLLSGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKY--THEVVTLWYRAPDILMGSKKYSTPIDIWSVGCIFAEMVNGRPLFPGVSETDQLMRIFRILGTPN 221          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2B_ANTMA (Cell division control protein 2 homolog B (Fragment) OS=Antirrhinum majus GN=CDC2B PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.483e-39
Identity = 89/201 (44.28%), Postives = 129/201 (64.18%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVAS-PEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +ALKK+R +  E E V   A REI +L+ + H N++ L+ +V       LYLVF Y++ DL   + S PE       VK ++ Q+L G+ +CH++ VLHRD+K  NLLID     +K+ADFGLA  F    +   T  VVTLWYR PE+LLG+  Y   VD+WS GCI AE++  KP+ PG +E+++LHKI+++ G+P+E+
Sbjct:   17 IALKKIRLEQ-EDEGVPSTAIREISLLKEMHHENIVNLKDVVHREKR--LYLVFEYLDLDLKKHMDSCPEFSQDLHMVKMFLCQILRGVAYCHSHRVLHRDLKPQNLLIDRGSNTIKLADFGLARAFGIPVR-TFTHEVVTLWYRAPEVLLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELHKIFRIIGTPNED 213          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK16_RAT (Cell division protein kinase 16 OS=Rattus norvegicus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.161e-39
Identity = 83/199 (41.71%), Postives = 124/199 (62.31%), Query Frame = 2
Query:    5 IVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +VALK++R ++ E      + RE+ +L+ L H N++ L  ++ +  S  L LVF Y++ DL   +           VK ++ QLL GL +CH   VLHRD+K  NLLI++ G LK+ADFGLA +         ++ VVTLWYRPP++LLG+TDY   +D+W  GCI  E+  G+P+ PG T  EQLH I+++ G+P+E+
Sbjct:  190 LVALKEIRLEHEEGAPCTAI-REVSLLKDLKHANIVTLHDIIHTEKS--LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLA-YAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSGQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTED 384          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_EMENI (Cell division control protein 2 OS=Emericella nidulans GN=nimX PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.161e-39
Identity = 91/219 (41.55%), Postives = 129/219 (58.90%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLA-------------------GLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            +IVALKK+R +  E E V   A REI +L+ ++ PN+++L  +V +     LYLVF +++ DL                    G   S  +   +  VK +M QL+ G+  CH++ VLHRD+K  NLLID DG LK+ADFGLA  F    +   T  VVTLWYR PE+LLG   Y  GVD+WS G I AE+   KP+ PG +E++++ KI+++ G+P E
Sbjct:   29 RIVALKKIRLE-AEDEGVPSTAIREISLLKEMNDPNIVRLLNIVHAD-GHKLYLVFEFLDLDLKKYMEALPVSEGGRGRALPDGSTLSRNLGLGDAMVKKFMAQLIEGIRFCHSHRVLHRDLKPQNLLIDRDGNLKLADFGLARAFGVPLR-TYTHEVVTLWYRSPEILLGGRQYSTGVDMWSCGAIFAEMCTRKPLFPGDSEIDEIFKIFRILGTPDE 244          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: PHO85_YARLI (Negative regulator of the PHO system OS=Yarrowia lipolytica GN=PHO85 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 86/201 (42.79%), Postives = 127/201 (63.18%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVK--FTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            ++VALK++  D+ E  +     REI +++ L H N++ L  ++ +     L LVF YM+ DL   + +   K      QVK +M+QLL G+  CH+N VLHRD+K  NLLI+  G LK+ADFGLA  F     +  ++ VVTLWYR P++LLG+  Y   +D+WSAGCI+AE+  G+P+ PG +  +QL  I+KL G+P+E
Sbjct:   31 QLVALKEINLDS-EEGTPSTAIREISLMKELKHENIVTLYDVIHTENK--LNLVFEYMDKDLKKFMDTNGNKGALETKQVKWFMYQLLRGILFCHDNRVLHRDLKPQNLLINAKGQLKLADFGLARAFGIP-VNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSAGCIMAEMFTGRPLFPGSSNDDQLQHIFKLMGTPNE 227          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 89/201 (44.28%), Postives = 124/201 (61.69%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELL-AGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +IVALK+VR D+ +        REI +L+ L H N+++L  ++ S     L LVF + + DL     S         VK ++ QLL GL  CH+  VLHRD+K  NLLI+ +G LK+ADFGLA  F    +   ++ VVTLWYRPP++L GA  Y   +D+WSAGCI AEL  AG+P+ PG    +QL +I++L G+P+EE
Sbjct:   28 EIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEE 225          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 89/201 (44.28%), Postives = 124/201 (61.69%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELL-AGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +IVALK+VR D+ +        REI +L+ L H N+++L  ++ S     L LVF + + DL     S         VK ++ QLL GL  CH+  VLHRD+K  NLLI+ +G LK+ADFGLA  F    +   ++ VVTLWYRPP++L GA  Y   +D+WSAGCI AEL  AG+P+ PG    +QL +I++L G+P+EE
Sbjct:   28 EIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEE 225          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 89/201 (44.28%), Postives = 124/201 (61.69%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELL-AGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +IVALK+VR D+ +        REI +L+ L H N+++L  ++ S     L LVF + + DL     S         VK ++ QLL GL  CH+  VLHRD+K  NLLI+ +G LK+ADFGLA  F    +   ++ VVTLWYRPP++L GA  Y   +D+WSAGCI AEL  AG+P+ PG    +QL +I++L G+P+EE
Sbjct:   28 EIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEE 225          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_PONAB (Cell division control protein 2 homolog OS=Pongo abelii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 84/202 (41.58%), Postives = 122/202 (60.40%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVAS--PEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            ++V +KK+R ++ E        REI +L+ L HPN++ L+ ++       LYL+F ++  DL   + S  P        VK Y++Q+L G+  CH+  VLHRD+K  NLLIDD G +K+ADFGLA  F    +   T  VVTLWYR PE+LLG+  Y   VD+WS G I AEL   KP+  G +E++QL +I++  G+P+ E
Sbjct:   28 QVVTMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQ--DSRLYLIFEFLSMDLKKYLDSIPPGQYMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGIPIR-VYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNE 226          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 84/202 (41.58%), Postives = 128/202 (63.37%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVAS-PEVKFTE-PQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            ++VA+KK+R ++ E        REI +L+ L HPN++ L+ ++       LYL+F ++  DL   + + P  ++ +  +VK Y++Q+L G+  CH+  VLHRD+K  NLLIDD GV+K+ADFGLA  F    +   T  VVTLWYR PE+LLG+  Y   VD+WS G I AEL   KP+  G +E++QL +I++  G+P+ +
Sbjct:   28 QVVAMKKIRLESEEEGVPSTAIREISLLKELHHPNIVCLQDVLMQ--DARLYLIFEFLSMDLKKYLDTIPSGQYLDRSRVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGVIKLADFGLARAFGIPVR-VYTHEVVTLWYRSPEVLLGSALYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNND 226          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2H_PLAKH5.483e-3942.35Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2B_ANTMA5.483e-3944.28Cell division control protein 2 homolog B (Fragmen... [more]
CDK16_RAT7.161e-3941.71Cell division protein kinase 16 OS=Rattus norvegic... [more]
CDC2_EMENI7.161e-3941.55Cell division control protein 2 OS=Emericella nidu... [more]
PHO85_YARLI9.352e-3942.79Negative regulator of the PHO system OS=Yarrowia l... [more]
CDK5_MOUSE9.352e-3944.28Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN9.352e-3944.28Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN9.352e-3944.28Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
CDC2_PONAB9.352e-3941.58Cell division control protein 2 homolog OS=Pongo a... [more]
CDC2_CHICK9.352e-3941.58Cell division control protein 2 homolog OS=Gallus ... [more]

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Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
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