DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.132e-37
Identity = 84/196 (42.86%), Postives = 117/196 (59.69%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSP 592
            VA+KK+R    + E V F A REI +L+ L   N+I+L  +       +L+LVF +ME DL  ++    +  +    K Y+  +L GL  CH   VLHRD+K +NLLI  DG LK+ADFGLA  F    ++  T +V   WYR PELL G   YG  VD+W+AGCI AELL  +P + G ++++QL KI+   G+P
Sbjct:   45 VAIKKIRLGKYK-EGVNFTALREIKLLKELKDSNIIEL--IDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADFGLARIFGSPERN-FTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTP 236          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.132e-37
Identity = 84/196 (42.86%), Postives = 117/196 (59.69%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSP 592
            VA+KK+R    + E V F A REI +L+ L   N+I+L  +       +L+LVF +ME DL  ++    +  +    K Y+  +L GL  CH   VLHRD+K +NLLI  DG LK+ADFGLA  F    ++  T +V   WYR PELL G   YG  VD+W+AGCI AELL  +P + G ++++QL KI+   G+P
Sbjct:   45 VAIKKIRLGKYK-EGVNFTALREIKLLKELKDSNIIEL--IDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADFGLARIFGSPERN-FTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTP 236          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKE1_ORYSJ (Cyclin-dependent kinase E-1 OS=Oryza sativa subsp. japonica GN=CDKE-1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.702e-37
Identity = 89/220 (40.45%), Postives = 130/220 (59.09%), Query Frame = 2
Query:    8 VALKKVRF----DNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEP----QVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLI----DDDGVLKIADFGLASFFDPNHKHPMTSR--VVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIM--------PGRTEVEQLHKIYKLCGSPSEE 601
            +A+KK +     D + P ++    REI++LR ++H NV+KL  +  +    SLYL F Y EHDL  ++     K   P     VK  + QLL+GL + H+N ++HRD+K SN+L+    ++ G++KIADFGLA  +    K P++    VVT+WYR PELLLGA  Y   VD+W+ GCI AELL  KP+         P   +++QL KI+K+ G P+ E
Sbjct:   56 IAIKKFKQSKEGDGVSPTAI----REIMLLREINHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLNLPINPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIIKIADFGLARIYQAPLK-PLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEAKATPNPFQLDQLDKIFKVLGHPTVE 270          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_CAEEL (Cell division control protein 2 homolog OS=Caenorhabditis elegans GN=cdk-1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.493e-36
Identity = 77/200 (38.50%), Postives = 121/200 (60.50%), Query Frame = 2
Query:    5 IVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLV--ASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            +VA+KK+R ++ +        REI +L+ L HPNV+ LE ++       L+L+F ++  DL   +     +       +K Y  Q+L  +  CH   V+HRD+K  NLL+D++G +K+ADFGLA       +   T  VVTLWYR PE+L+GA  Y +GVD+WS GCI AE+   KP+  G +E+++L +I+++ G+P+E
Sbjct:   47 MVAMKKIRLESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENR--LFLIFEFLSFDLKRYMDQLGKDEYLPLETLKSYTFQILQAMCFCHQRRVIHRDLKPQNLLVDNNGAIKLADFGLARAIGIPIR-VYTHEVVTLWYRAPEILMGAQRYSMGVDMWSIGCIFAEMATKKPLFQGDSEIDELFRIFRVLGTPTE 243          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: PHO85_CANGA (Negative regulator of the PHO system OS=Candida glabrata GN=PHO85 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 86/203 (42.36%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQ------VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VALK+V+ D+ E  +     REI +++ L H N+++L  ++ +     L LVF YM++DL   + S  V    P+      VK +  QLL GL  CH N +LHRD+K  NLLI   G LK+ DFGLA  F     +  +S VVTLWYR P++L+G+  Y   +D+WS GCILAE++ GKP+ PG  + EQL  I+   G+P+E
Sbjct:   32 VALKEVKLDS-EEGTPSTAIREISLMKELKHDNIVRLYDVIHTENK--LTLVFEYMDNDLKKYMDSRTVG-NAPRGLEMNLVKYFQWQLLEGLAFCHENKILHRDLKPQNLLITKRGQLKLGDFGLARAFGIP-VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDKMGTPNE 229          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36
Identity = 90/210 (42.86%), Postives = 126/210 (60.00%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHP-NVIKLEGL--VTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQ------VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDD-GVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            ++VALKK R +  E        REI ILR L     V++L  +   T      LYLVF +++ DL   V +   K   P+      +K +++QL  G+ HCH +GVLHRD+K  NLL+D + G+LKIAD GL   F    K   T  +VTLWYR PE+LLG+T Y  GVD+WS GCI AE++  + + PG +E++QL  I++L G+P+EE
Sbjct:   28 QLVALKKTRLEMDEEGIPPTALREISILRLLSQSLYVVRLLSVEQATKNGKPVLYLVFEFLDTDLKKFVDAYR-KGPNPRPLPTNVIKSFLYQLCKGVAHCHGHGVLHRDLKPQNLLVDKEKGILKIADLGLGRAFTVPMKS-YTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSELQQLLHIFRLLGTPTEE 235          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKL5_MOUSE (Cyclin-dependent kinase-like 5 OS=Mus musculus GN=Cdkl5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36
Identity = 88/202 (43.56%), Postives = 120/202 (59.41%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGS-PSEE 601
            +IVA+KK + D+ E E VK    RE+ +LR L   N+++L+     R    LYLVF Y+E ++  L+          +VK Y++QL+  +  CH N ++HRDIK  NLLI  + VLK+ DFG A      +    T  V T WYR PELLLGA  YG  VD+WS GCIL EL  G+P+ PG +E++QL  I K+ G  PSE+
Sbjct:   37 EIVAIKKFK-DSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGK--LYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSPELLLGA-PYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQ 234          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKL5_HUMAN (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36
Identity = 88/202 (43.56%), Postives = 120/202 (59.41%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMA-REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGS-PSEE 601
            +IVA+KK + D+ E E VK    RE+ +LR L   N+++L+     R    LYLVF Y+E ++  L+          +VK Y++QL+  +  CH N ++HRDIK  NLLI  + VLK+ DFG A      +    T  V T WYR PELLLGA  YG  VD+WS GCIL EL  G+P+ PG +E++QL  I K+ G  PSE+
Sbjct:   37 EIVAIKKFK-DSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGK--LYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSPELLLGA-PYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQ 234          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC28_ENCCU (Probable cell division control protein 28 homolog OS=Encephalitozoon cuniculi GN=CDC28 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36
Identity = 81/201 (40.30%), Postives = 123/201 (61.19%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLV--ASPEVKFTEPQ-VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            ++VALKK+R +N          REIL+L+ L H  +++L  ++ +     +YLVF Y+E DL   +   S E +  E   V+    QLL+ +E+CH+  + HRD+K  N+L+D    +K+ADFGL        +   T+ VVTLWYRPPELLLG   Y   VD+WSA CI+AE++  +P  PG +E++QL +I+K+ G+P+
Sbjct:   29 RVVALKKIRLENENEGIPATTIREILLLKNLKHSTIVELSDVIYNNNK--MYLVFEYVELDLRRYLDRMSDEGRLVEEGFVRKMSQQLLTAMEYCHSRNIFHRDLKPQNILVDPKENIKLADFGLGRAAGIPLR-TYTTEVVTLWYRPPELLLGCKYYDASVDVWSAACIMAEVVLMRPFFPGDSEIDQLFRIFKVLGTPN 226          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: ERK1_DICDI (Extracellular signal-regulated kinase 1 OS=Dictyostelium discoideum GN=erkA PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36
Identity = 83/203 (40.89%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    8 VALKKVR--FDNLEPESVKFMAREILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+   FDNL+    K   REI +LR   H N+I ++ ++   +      +Y+V   M+ DL  ++ SP+   ++   + +++Q+L GL+H H+  VLHRD+K SNLLI++D +LKI D GLA   D  H+  MT  V T WYR PE++L    Y   +D+WS GCI AELL  KP+  G+  + Q+  I +  GSPSEE
Sbjct:  175 VAIKKISKAFDNLK--DTKRTLREIHLLRHFKHENLISIKDILKPNSKEQFEDVYIVSELMDTDLHQIITSPQ-PLSDDHCQYFVYQMLRGLKHIHSANVLHRDLKPSNLLINEDCLLKICDLGLARVEDATHQGFMTEYVATRWYRAPEVILSWNKYTKAIDIWSVGCIFAELLGRKPLFQGKDYIHQITLIIETIGSPSEE 374          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKD1_ORYSJ5.132e-3742.86Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI5.132e-3742.86Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKE1_ORYSJ6.702e-3740.45Cyclin-dependent kinase E-1 OS=Oryza sativa subsp.... [more]
CDC2_CAEEL1.493e-3638.50Cell division control protein 2 homolog OS=Caenorh... [more]
PHO85_CANGA1.950e-3642.36Negative regulator of the PHO system OS=Candida gl... [more]
CKB11_ORYSJ2.547e-3642.86Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]
CDKL5_MOUSE2.547e-3643.56Cyclin-dependent kinase-like 5 OS=Mus musculus GN=... [more]
CDKL5_HUMAN2.547e-3643.56Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=... [more]
CDC28_ENCCU2.547e-3640.30Probable cell division control protein 28 homolog ... [more]
ERK1_DICDI3.326e-3640.89Extracellular signal-regulated kinase 1 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
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