DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.344e-36
Identity = 90/218 (41.28%), Postives = 130/218 (59.63%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHP----NVIKLEGLVTSRMSC-------SLYLVFHYMEHDLAGLVASPEVKFTEPQ------VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDD-GVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            K+VALKK R +  E        REI +L+ L        ++ +E ++ S+ S        +LYLVF Y++ DL   + S   K + P+      V+ +M QL  G+ HCH++GVLHRD+K  NLL+D D G+LKIAD GL+  F    K   T  +VTLWYR PE+LLG+T Y   VD+WS GCI AE++  + + PG +E +QL  I++L G+P+E+
Sbjct:   28 KLVALKKTRLEMDEEGIPPTALREISLLQMLSQSIYIVRLLCVEHVIQSKDSTVSHSPKSNLYLVFEYLDTDLKKFIDSHR-KGSNPRPLEASLVQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILKIADLGLSRAFTVPLK-AYTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHIFRLLGTPTEQ 243          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: BUR1_DEBHA (Serine/threonine-protein kinase BUR1 OS=Debaryomyces hansenii GN=BUR1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.344e-36
Identity = 83/219 (37.90%), Postives = 118/219 (53.88%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS-----------LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPN----------HKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            ++VALK++   + +        REI IL++L+H N++K+  ++      S            Y V  YM  DL GL+ +P +      +KC+M QLL G+++ H    LHRDIK +N+LID +G LKIADFGLA  +  +           +   T  VVT WYRPPELLLG   Y   VD+W  GC+  EL   KPI+ G+T+  Q   I+ L G P+
Sbjct:   63 ELVALKQLINHSAKEGFPITAMREITILKKLNHKNILKIIDMIYEEPKISNPQDILHQRGCFYTVSPYMCSDLVGLLENPNINLEVSHIKCFMEQLLHGIQYIHEQMFLHRDIKAANILIDRNGTLKIADFGLARVYHGSPPKFMSGPGGGERAYTGLVVTRWYRPPELLLGERRYTTAVDMWGIGCVFGELFTRKPILVGKTDSHQAQLIFDLVGPPN 281          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK06_CHICK (Mitogen-activated protein kinase 6 OS=Gallus gallus GN=MAPK6 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 86/206 (41.75%), Postives = 126/206 (61.17%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLV-------------TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            K VA+KK+     +P+SVK   REI I+RRLDH N++K+  ++              + ++C +Y+V  YME DLA L+    +   E   + +M+QLL GL++ H+  VLHRD+K +NL I+ +D VLKI DFGLA   DP++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCI AE+L GK +  G  E+EQ+  I
Sbjct:   44 KRVAVKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNC-VYIVQEYMETDLANLLEQGPL--LEDHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLI 244          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_SCHPO (Cell division control protein 2 OS=Schizosaccharomyces pombe GN=cdc2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 82/209 (39.23%), Postives = 134/209 (64.11%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMA-REILILRRLD----HPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGL---VASPEVKFTEPQ-VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +IVA+KK+R ++ E E V   A REI +L+ ++      N ++L  ++ +     LYLVF +++ DL      ++       +P+ V+ + +QL++G+  CH+  ++HRD+K  NLLID +G LK+ADFGLA  F    ++  T  +VTLWYR PE+LLG+  Y  GVD+WS GCI AE++   P+ PG +E++++ KI+++ G+P+EE
Sbjct:   28 RIVAMKKIRLED-ESEGVPSTAIREISLLKEVNDENNRSNCVRLLDILHAESK--LYLVFEFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRDLKPQNLLIDKEGNLKLADFGLARSFGVPLRN-YTHEIVTLWYRAPEVLLGSRHYSTGVDIWSVGCIFAEMIRRSPLFPGDSEIDEIFKIFQVLGTPNEE 232          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 81/203 (39.90%), Postives = 126/203 (62.07%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVAS-PEVKFTEPQ-VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA-SFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            +IVA+KK+R ++ +        REI +L+ L H N++ LE ++       +YL+F ++  DL   + S P  K  E + V+ Y++Q+ S +  CH   VLHRD+K  NLLID  G++K+ADFGL  SF  P   +  T  +VTLWYR PE+LLG+  Y   VD+WS GCI AE+   KP+  G +E++QL +++++  +P+E+
Sbjct:   28 QIVAMKKIRLESDDEGVPSTAIREISLLKELKHENIVCLEDVLMEENR--IYLIFEFLSMDLKKYMDSLPVDKHMESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLGRSFGIPVRIY--THEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATRKPLFQGDSEIDQLFRMFRILKTPTED 226          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: BUR1_ASHGO (Serine/threonine-protein kinase BUR1 OS=Ashbya gossypii GN=BUR1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 88/229 (38.43%), Postives = 127/229 (55.46%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLV---------------TSRMSCS------LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFF---DPNHKHP--------MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSE 598
            VA+KK+              REI IL+RL+H NV++L  +V               +S+ S S       Y++  YM  DL+G++ +P V      +K  M Q+L G+ + H    +HRDIK +N+L+D  G+LKIADFGLA  +    PN K+P         TS VVT WYR PEL+LG  +Y   VD+W  GC+ AE    +PI+ G+T+++Q H I+KL G+PS+
Sbjct:   82 VAMKKILVKTENDLFPITAQREITILKRLNHRNVVQLIEMVYDYPPAQNGAAYGQDSSQASASADTMKSFYMILPYMVADLSGILHNPRVTLEMADIKNMMLQILEGINYIHCKKFMHRDIKTANILLDHKGILKIADFGLARNYYGAPPNLKYPGGAGTDAKYTSVVVTRWYRAPELVLGDKNYTTAVDIWGIGCVFAEFFEKRPILQGKTDIDQGHVIFKLMGTPSD 310          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 92/209 (44.02%), Postives = 122/209 (58.37%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDH-PNVIKLEGL---VTSRMSCSLYLVFHYMEHDLAGLVAS---PEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGV-LKIADFGLASFFD-PNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            KIVALKK R    E        REI ILR L   P+V++L  +   ++      LYLVF YM+ D+   + S            +K  M+QL  G+  CH +G+LHRD+K  NLL+D   + LKIAD GLA  F  P  K+  T  ++TLWYR PE+LLGAT Y   VD+WS GCI AEL+  + I  G +E++QL  I+KL G+P+EE
Sbjct:   38 KIVALKKTRLHEDEEGVPSTTLREISILRMLARDPHVVRLMDVKQGLSKEGKTVLYLVFEYMDTDVKKFIRSFRSTGKNIPTQTIKSLMYQLCKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIADLGLARAFTLPMKKY--THEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQAIFQGDSELQQLLHIFKLFGTPNEE 244          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK06_RAT (Mitogen-activated protein kinase 6 OS=Rattus norvegicus GN=Mapk6 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 86/205 (41.95%), Postives = 124/205 (60.49%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSC------------SLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            K VA+KK+     +P+SVK   REI I+RRLDH N++K+  ++    S             S+Y+V  YME DLA ++    +   E   + +M+QLL GL++ H+  VLHRD+K +NL I+ +D VLKI DFGLA   DP++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCI AE+L GK +  G  E+EQ+  I
Sbjct:   44 KRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPL--LEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLI 244          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK06_PONAB (Mitogen-activated protein kinase 6 OS=Pongo abelii GN=MAPK6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 86/205 (41.95%), Postives = 124/205 (60.49%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSC------------SLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            K VA+KK+     +P+SVK   REI I+RRLDH N++K+  ++    S             S+Y+V  YME DLA ++    +   E   + +M+QLL GL++ H+  VLHRD+K +NL I+ +D VLKI DFGLA   DP++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCI AE+L GK +  G  E+EQ+  I
Sbjct:   44 KRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPL--LEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLI 244          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK06_MOUSE (Mitogen-activated protein kinase 6 OS=Mus musculus GN=Mapk6 PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 86/205 (41.95%), Postives = 124/205 (60.49%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSC------------SLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLID-DDGVLKIADFGLASFFDPNHKHP--MTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKI 571
            K VA+KK+     +P+SVK   REI I+RRLDH N++K+  ++    S             S+Y+V  YME DLA ++    +   E   + +M+QLL GL++ H+  VLHRD+K +NL I+ +D VLKI DFGLA   DP++ H   ++  +VT WYR P LLL   +Y   +D+W+AGCI AE+L GK +  G  E+EQ+  I
Sbjct:   44 KRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPL--LEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLI 244          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CKB12_ARATH4.344e-3641.28Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
BUR1_DEBHA4.344e-3637.90Serine/threonine-protein kinase BUR1 OS=Debaryomyc... [more]
MK06_CHICK5.674e-3641.75Mitogen-activated protein kinase 6 OS=Gallus gallu... [more]
CDC2_SCHPO7.410e-3639.23Cell division control protein 2 OS=Schizosaccharom... [more]
CDC2_DROME7.410e-3639.90Cell division control protein 2 homolog OS=Drosoph... [more]
BUR1_ASHGO7.410e-3638.43Serine/threonine-protein kinase BUR1 OS=Ashbya gos... [more]
CKB21_ARATH9.678e-3644.02Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
MK06_RAT1.264e-3541.95Mitogen-activated protein kinase 6 OS=Rattus norve... [more]
MK06_PONAB1.264e-3541.95Mitogen-activated protein kinase 6 OS=Pongo abelii... [more]
MK06_MOUSE1.264e-3541.95Mitogen-activated protein kinase 6 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
back to top