DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: SSN3_KLULA (Serine/threonine-protein kinase SSN3 OS=Kluyveromyces lactis GN=SSN3 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 70/195 (35.90%), Postives = 109/195 (55.90%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLV---ASPEVKFTEPQV-KCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSR--VVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRT-----------EVEQLHKIYKLCGSPSEE 601
            RE+ + R LD+ ++ KL  +   + S  +Y+V  + EHDL  ++   + PE +   P++ K  M Q+L G+ + H N +LHRD+K +N+++  DG +KI D GLA  F+   +   T    +VT+WYR PEL+LGA  Y   +DLW+ GCI AEL+  +PI  G             +  Q  KI ++ GSP  +
Sbjct:  232 REMSLCRELDNNHLTKLVEIFLEKKS--IYMVSEFAEHDLLQIIHFHSHPEKRLIPPRMLKSIMWQILDGVSYLHQNWILHRDLKPANIMVTVDGCVKIGDLGLARKFNNMVQTLYTGDKVIVTIWYRAPELILGARHYTPAIDLWAVGCIFAELIGLRPIFKGEEAKMESKKSVLFQANQFQKILEVMGSPDHK 424          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: SMK1_YEAST (Sporulation-specific mitogen-activated protein kinase SMK1 OS=Saccharomyces cerevisiae GN=SMK1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 2
Query:   98 HPNVIKLEGL--VTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA-----SFFDPNH--KHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            H N++ L  L  VTS     LY     +++DLA ++ S  V+ +E  +K +++Q+L GL++ H+  V+HRD+K  N+L   +G LKI DFGLA      FF  +   +  +T+ V T WYR PELLL    Y   VD+W+ GCILAE  A KP+  GR  + Q+ +I K+ G+P ++
Sbjct:   97 HKNIVNLIDLEIVTSSPYDGLYCYQELIDYDLAKVIHS-SVQLSEFHIKYFLYQILCGLKYIHSADVIHRDLKPGNILCTLNGCLKICDFGLARGIHAGFFKCHSTVQPHITNYVATRWYRAPELLLSNQPYSKSVDIWAVGCILAEFYARKPVFMGRDSMHQIFEIIKVLGTPDKD 272          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: PMK2_CAEEL (Mitogen-activated protein kinase pmk-2 OS=Caenorhabditis elegans GN=pmk-2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 76/219 (34.70%), Postives = 114/219 (52.05%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDD-----------------GVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK           K   RE+ +LR L H NV+++  + T     S    +Y V   M  DL  ++     + T+ Q++  ++Q+L GL++ H+ G++HRD+K SN+ +++                     KI DFGLA   D      MT  V T WYR PE++L    Y   VD+WS GCILAEL++G+P+ PG   ++QL KI  + G+P EE
Sbjct:   75 VAIKKFFRPFQSTIHAKRTYRELKLLRTLQHDNVLEMIDVFTPDPDASSLNNVYFVSVLMGSDLQNIMKIQ--RLTDEQIQLLIYQVLRGLKYIHSAGIIHRDLKPSNIAVNERCEVKVFLSFSQLSFLILSFFKILDFGLARAQDAE----MTGYVATRWYRAPEIMLNWMHYTQTVDVWSVGCILAELVSGRPLFPGDDHIDQLTKIMSVVGTPKEE 287          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 79/208 (37.98%), Postives = 116/208 (55.77%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS---LYLVFHYMEHDLAGLVAS-PEVKFTEP--QVKCYMHQLLSGLEHCHNN-GVLHRDIKGSNLLIDDDG-VLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            ++VA+KKV  D       ++  RE+ I++ LDHPNV+ L+    SR       L LV  ++   +     S   +    P   VK Y +Q+  GL + HN  G+ HRDIK  NLL++     LKI DFG A         P  S + + +YR PEL+ GAT+Y   +D+WS GC++AELL G+P+ PG + V+QL +I K+ G+P+ E
Sbjct:  106 EVVAIKKVLQDK------RYKNRELQIMQMLDHPNVVCLKHSFYSRTENEEVYLNLVLEFVPETVNRTARSYSRMNQLMPLIYVKLYTYQICRGLAYLHNCCGLCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGE--PNISYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTRE 305          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: HOG1_WALIC (Mitogen-activated protein kinase HOG1 (Fragment) OS=Wallemia ichthyophaga GN=HOG1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 69/175 (39.43%), Postives = 105/175 (60.00%), Query Frame = 2
Query:   77 LILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            L+++ L H N+I L  +  S     +Y +   +  DL  L++S  ++     V+ +++Q+L  L+  H  GV+HRD+K SN+LI+++  LKI DFGLA   DP     MT  V T +Y+ PE++L   +Y   VD+WS GCI AE++ G+PI PG+  V QL  I +L GSP E+
Sbjct:    3 LVIKHLRHENIISLLDVFISPGE-DIYFITELLGTDLHRLLSSRPLE--RQFVQYFLYQMLRALKFVHPAGVVHRDLKPSNILINENCDLKICDFGLARLQDPQ----MTGYVSTRYYKAPEIMLTWQEYDSAVDIWSVGCIFAEMIDGRPIFPGKDHVHQLTVITELLGSPPED 170          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKF2_ORYSJ (Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica GN=CDKF-2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 67/170 (39.41%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   98 HPNVIKLEGLVTSRM----SCSLYLVFHYMEHDLAGLVASPEVK---FTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCG 586
            HP++++L                Y+V  Y++      V   E +   F E + +  M QLL G+   H  GV+HRD+K  N+++   G LKI DFG++         P TS VVTLWYR PEL+LG+ +Y   VD WS GCI+AELLAG P+ PGR+E++QL++++   G
Sbjct:   59 HPHLVELRAAHREMRRGGGGACCYVVMEYVDGPSLSRVVREERRGRPFPEAEARRLMRQLLDGVAAMHAAGVMHRDLKPDNVVVGPRGDLKICDFGMSRVTAAGAP-PYTSPVVTLWYRAPELILGSQEYDSLVDTWSLGCIMAELLAGAPLFPGRSEMDQLNRVFDTVG 227          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: SSN3_GIBMO (Serine/threonine-protein kinase SSN3 OS=Gibberella moniliformis GN=SSN3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 78/220 (35.45%), Postives = 116/220 (52.73%), Query Frame = 2
Query:   11 ALKKVRFDNLEPESVKFMA------REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLV----ASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFD-PNHKHPMTSRVV-TLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRT-----------EVEQLHKIYKLCGSPSEE 601
            A+KK + D  E E + +        RE+ +   L H NVI+L  +V       +++VF Y EHDL  ++      P        +K  M QLL+G ++ H N VLHRD+K +N+++   G +KI D GLA  FD P H      +VV T+WYR PEL+LG+  Y   +D+W+ GCI AELL+ +PI  G                Q+ KI ++ G P+++
Sbjct:   69 AIKKFKPDK-EGEQISYTGISQSAIREMSLCSELHHINVIRLCEIVLEDKC--IFMVFEYAEHDLLQIIHHHTQQPRHPIPPATIKSIMFQLLNGCQYLHINWVLHRDLKPANIMVTSSGEVKIGDLGLARRFDKPLHSLFSGDKVVVTIWYRAPELILGSYHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFRRNQMQKIIEIMGVPTKD 285          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: SSN3_EMENI (Serine/threonine-protein kinase ssn3 OS=Emericella nidulans GN=ssn3 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 2
Query:   68 REILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQ--------VKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLAS-FFDP-NHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRT-----------EVEQLHKIYKLCGSPSEE 601
            RE+ +   LDH NV++L  ++       +++VF Y EHDL  ++       T+PQ        V+  + QLL+GL + H N VLHRD+K +N+L+   G ++I D GLA  F+ P N        VVT+WYR PELL+G+  Y   VDLW+ GCI AELL+ +PI  G             +  Q+ KI  + G P  +
Sbjct:   91 REMALCSELDHANVVQLAEIILEDKC--IFMVFEYTEHDLLQIIHH----HTQPQRHPIPAAMVRSILFQLLNGLLYLHTNWVLHRDLKPANILVTSSGAIRIGDLGLARLFYKPLNSLFSGDKVVVTIWYRAPELLMGSRHYTPAVDLWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMMKIIDIMGLPHRD 283          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MPK9_ORYSJ (Mitogen-activated protein kinase 9 OS=Oryza sativa subsp. japonica GN=MPK9 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 75/202 (37.13%), Postives = 113/202 (55.94%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA--SFFDPNHKHPMTSRVVTLWYRPPELLLGA-TDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            VA+KKV            + REI +LR L HP++++++ ++   + R    +Y+VF  ME DL  ++ + +   T+   + +++QLL  L++ H   V HRD+K  N+L + +  LKI DFGLA  +F D       T  V T WYR PEL     + Y   +D+WS GCI AE+L GKP+ PG+  V QL  +  L G+PS
Sbjct:  133 VAIKKVHNIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKAND-DLTKEHYQFFLYQLLRALKYIHTASVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPS 333          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK09_CHICK (Mitogen-activated protein kinase 9 OS=Gallus gallus GN=MAPK9 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 71/202 (35.15%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++L+ ++H N+I L  + T + S      +YLV   M+ +L  ++    ++    ++   ++Q+L G++H H+ G++HRD+K SN+++  D  LKI DFGLA     N    MT  VVT +YR PE++LG   Y   VD+WS GCI+ EL+ G  I  G   ++Q +K+ +  G+PS E
Sbjct:   52 VAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVI---HMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFM--MTPYVVTRYYRAPEVILG-MGYKENVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTPSAE 247          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSN3_KLULA9.700e-2835.90Serine/threonine-protein kinase SSN3 OS=Kluyveromy... [more]
SMK1_YEAST9.700e-2839.55Sporulation-specific mitogen-activated protein kin... [more]
PMK2_CAEEL9.700e-2834.70Mitogen-activated protein kinase pmk-2 OS=Caenorha... [more]
KSG4_ARATH9.700e-2837.98Shaggy-related protein kinase delta OS=Arabidopsis... [more]
HOG1_WALIC9.700e-2839.43Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
CDKF2_ORYSJ9.700e-2839.41Putative cyclin-dependent kinase F-2 OS=Oryza sati... [more]
SSN3_GIBMO1.267e-2735.45Serine/threonine-protein kinase SSN3 OS=Gibberella... [more]
SSN3_EMENI1.267e-2737.19Serine/threonine-protein kinase ssn3 OS=Emericella... [more]
MPK9_ORYSJ1.267e-2737.13Mitogen-activated protein kinase 9 OS=Oryza sativa... [more]
MK09_CHICK1.267e-2735.15Mitogen-activated protein kinase 9 OS=Gallus gallu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
back to top