DC900398

Overview
NameDC900398
Unique NameDC900398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4027 contig Csv1_Contig4027:505..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK08_XENLA (Mitogen-activated protein kinase 8 OS=Xenopus laevis GN=mapk8 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 68/202 (33.66%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + S      LY+V   M+ +L  ++   +++    ++   ++Q+L G++H H+ G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VD+WS GCIL E++ G  + PG   ++Q +K+ +  G+P  E
Sbjct:   52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDLYIVMELMDANLCQVI---QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--TAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSVGCILGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCTE 247          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK08B_CYPCA (Mitogen-activated protein kinase 8B OS=Cyprinus carpio GN=mapk8b PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 68/202 (33.66%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + +      +YLV   M+ +L  ++   +++    ++   ++Q+L G +H H+ G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VD+WS GCI+AE++ G  + PG   ++Q +K+ +  G+PS+E
Sbjct:   52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI---QMELDHERLSYLLYQMLCGTKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAATGLL--MTPYVVTRYYRAPEVILG-MGYQANVDVWSVGCIMAEMVRGSVLFPGSDHIDQWNKVIEQLGTPSQE 247          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 76/207 (36.71%), Postives = 113/207 (54.59%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGL---VTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQ----VKCYMHQLLSGLEHCHNN-GVLHRDIKGSNLLIDD-DGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KKV  D       ++  RE+ I+R LDHPNV++L+      T +    L LV  Y+   +     S   K  +      ++ Y +Q+   + + H   GV HRDIK  NLL+++    +KI DFG A    P    P  S + + +YR PEL+ GAT+Y   +D+WS GC++AEL  G P+ PG T V+QL +I K+ G+P+ E
Sbjct:  128 VAIKKVLQDK------RYKNRELQIMRMLDHPNVVELKHSFFSTTEKDELYLNLVLEYVPETIYRASRS-YTKMNQHMPLIYIQLYTYQICRAMNYLHQVVGVCHRDIKPQNLLVNNVTHEVKICDFGSAKMLIPGE--PNISYICSRYYRAPELIFGATEYTSAIDMWSVGCVMAELFLGHPLFPGETSVDQLVEIIKILGTPARE 325          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CSK2A_ENCCU (Probable casein kinase II subunit alpha homolog OS=Encephalitozoon cuniculi GN=CKA1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 72/192 (37.50%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   17 KKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDD-DGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGK-PIMPGRTEVEQLHKIYKLCG 586
            +K+    L+P     + RE+LILR L H N+IKL  +V    S    L+F Y+EH+    +     K     +  Y  Q+LS L +CH+ G++HRDIK  N++I+     LKI D+GLA F+ P  ++ +  RV + +Y+ PELL+    Y   +D+WS GC+LAEL+  K P   G +  +QL KI ++ G
Sbjct:   59 EKIVIKALKPVRKAKICREVLILRNLSHKNIIKLMDVVVDPESQIYSLIFEYIEHEDYAKIFE---KLCYKDIVEYSRQILSALSYCHSMGIIHRDIKPQNMVINQARRELKIIDWGLAEFYHPKKEYSV--RVASRYYKGPELLVDYPYYDYSLDIWSFGCVLAELVFKKRPFFHGESNSDQLVKIARILG 245          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK10_MOUSE (Mitogen-activated protein kinase 10 OS=Mus musculus GN=Mapk10 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 67/202 (33.17%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + +      +YLV   M+ +L  ++   +++    ++   ++Q+L G++H H+ G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VD+WS GCI+ E++  K + PGR+ ++Q +K+ +  G+P  E
Sbjct:   90 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI---QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--TAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDIWSVGCIMGEMVRHKILFPGRSYIDQWNKVIEQLGTPCPE 285          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK08_MOUSE (Mitogen-activated protein kinase 8 OS=Mus musculus GN=Mapk8 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 68/202 (33.66%), Postives = 116/202 (57.43%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + S      +Y+V   M+ +L  ++   +++    ++   ++Q+L G++H H+ G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VDLWS GCI+ E++  K + PGR  ++Q +K+ +  G+P  E
Sbjct:   52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVI---QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--TAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPE 247          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK08_HUMAN (Mitogen-activated protein kinase 8 OS=Homo sapiens GN=MAPK8 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 68/202 (33.66%), Postives = 116/202 (57.43%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + S      +Y+V   M+ +L  ++   +++    ++   ++Q+L G++H H+ G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VDLWS GCI+ E++  K + PGR  ++Q +K+ +  G+P  E
Sbjct:   52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVI---QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR--TAGTSFMMTPYVVTRYYRAPEVILG-MGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPE 247          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MK08_DANRE (Mitogen-activated protein kinase 8 OS=Danio rerio GN=mapk8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 68/202 (33.66%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCS----LYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSEE 601
            VA+KK+          K   RE+++++ ++H N+I L  + T + +      +YLV   M+ +L  ++   +++    ++   ++Q+L G++H H  G++HRD+K SN+++  D  LKI DFGLA          MT  VVT +YR PE++LG   Y   VD+WS GCI+AE++ G  + PG   ++Q +K+ +  G+PS+E
Sbjct:   52 VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI---QMELDHERLSYLLYQMLCGIKHLHAAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAATGLL--MTPYVVTRYYRAPEVILG-MGYQANVDVWSIGCIMAEMVRGSVLFPGTDHIDQWNKVIEQLGTPSQE 247          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: MPK10_ORYSJ (Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica GN=MPK10 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.161e-27
Identity = 74/202 (36.63%), Postives = 113/202 (55.94%), Query Frame = 2
Query:    8 VALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLV---TSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA--SFFDPNHKHPMTSRVVTLWYRPPELLLGA-TDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            VA+KK+            + REI +LR L HP++++++ ++   + R    +Y+VF  ME DL  ++ + +   T+   + +++QLL  L++ H   V HRD+K  N+L + +  LKI DFGLA  +F D       T  V T WYR PEL     + Y   +D+WS GCI AE+L GKP+ PG+  V QL  +  L G+PS
Sbjct:   51 VAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKAND-DLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPS 251          
BLAST of DC900398 vs. ExPASy Swiss-Prot
Match: CDKL3_MACFA (Cyclin-dependent kinase-like 3 OS=Macaca fascicularis GN=CDKL3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.161e-27
Identity = 65/199 (32.66%), Postives = 111/199 (55.78%), Query Frame = 2
Query:    2 KIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFHYMEHDLAGLVASPEVKFTEPQVKCYMHQLLSGLEHCHNNGVLHRDIKGSNLLIDDDGVLKIADFGLA-SFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPS 595
            +IVA+K + ++  E    K   REI  L++  H N++ L  +   R    ++LVF +++H +   +          +++ Y+ Q+L  +++ H+N ++HRDIK  N+L+   G+ K+ DFG A +   P   +  T  V T WYR PEL+L  T YG  VD+W+ GC++ E+  G P +P  ++++ LHKI    G+ S
Sbjct:   28 QIVAIK-IFYERPEQSVNKIAMREIKFLKQFHHENLVNL--IEVFRQKKKIHLVFEFIDHTVLDELQHYCHGLESKRLRKYLFQILRAIDYLHSNNIIHRDIKPENILVSQSGITKLCDFGFARTLAAPGDIY--TDYVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGNPYLPSSSDLDLLHKIVLKVGNLS 221          
The following BLAST results are available for this feature:
BLAST of DC900398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MK08_XENLA1.267e-2733.66Mitogen-activated protein kinase 8 OS=Xenopus laev... [more]
MK08B_CYPCA1.267e-2733.66Mitogen-activated protein kinase 8B OS=Cyprinus ca... [more]
KSG2_ARATH1.267e-2736.71Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
CSK2A_ENCCU1.267e-2737.50Probable casein kinase II subunit alpha homolog OS... [more]
MK10_MOUSE1.655e-2733.17Mitogen-activated protein kinase 10 OS=Mus musculu... [more]
MK08_MOUSE1.655e-2733.66Mitogen-activated protein kinase 8 OS=Mus musculus... [more]
MK08_HUMAN1.655e-2733.66Mitogen-activated protein kinase 8 OS=Homo sapiens... [more]
MK08_DANRE1.655e-2733.66Mitogen-activated protein kinase 8 OS=Danio rerio ... [more]
MPK10_ORYSJ2.161e-2736.63Mitogen-activated protein kinase 10 OS=Oryza sativ... [more]
CDKL3_MACFA2.161e-2732.66Cyclin-dependent kinase-like 3 OS=Macaca fascicula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900398 VSS Citrus sinensis cDNA clone VS28972 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900398 ID=DC900398; Name=DC900398; organism=Citrus sinensis; type=EST; length=602bp
CAAAATCGTAGCACTAAAGAAAGTACGGTTTGACAATTTGGAACCTGAGA
GTGTGAAATTTATGGCTAGAGAGATTCTCATATTGCGGAGATTGGATCAT
CCAAATGTTATAAAGTTGGAAGGTTTAGTGACGTCAAGGATGTCATGTAG
TTTGTACCTGGTATTTCATTATATGGAGCATGATTTGGCTGGACTTGTTG
CAAGCCCTGAAGTGAAGTTCACAGAACCACAGGTTAAATGTTACATGCAT
CAACTGCTATCTGGACTTGAGCACTGTCACAACAATGGTGTGCTTCACCG
GGACATTAAAGGCTCTAATCTTCTAATTGATGATGATGGAGTGCTTAAAA
TAGCTGATTTTGGTTTGGCATCTTTCTTTGATCCAAATCATAAGCATCCT
ATGACTAGTCGAGTGGTTACTCTTTGGTATCGACCTCCTGAGCTGCTTCT
GGGGGCTACTGATTACGGTGTGGGTGTTGATCTATGGAGCGCAGGTTGTA
TTTTAGCTGAGCTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACGGAG
GTAGAGCAACTACATAAGATATATAAGTTATGTGGTTCCCCTTCAGAAGA
AT
back to top