DC900387 | Citrus Genome Database

Overview


Name	DC900387
Unique Name	DC900387
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	699

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6745	contig	Csv1_Contig6745:1707..2408.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOA_RAT (Fructose-bisphosphate aldolase A OS=Rattus norvegicus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 8.965e-33
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 2

Query:   59 KLHRRVIAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            K     IA  TV AL+RT+P AVP V FLSGGQSEEEA+ NLNA+N+    KPW+L+FS+GRALQ S LKAW GK+EN++ AQ  ++ R  ANS A  G Y    Q G  A+ESL + ++ Y
Sbjct:  243 KFSNEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYTPSGQSGAAASESLFISNHAY 364

HSP 2 Score: 31.187 bits (69), Expect = 8.965e-33
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1

Query:    7 EGTLLKPNMVTPG 45
            EGTLLKPNMVTPG
Sbjct:  225 EGTLLKPNMVTPG 237

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALF_ECHMU (Fructose-bisphosphate aldolase OS=Echinococcus multilocularis GN=FBPA PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.168e-32
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 2

Query:   80 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            A  TV ALQRT+P AVP VVFLSGGQSE +ATRNLNA+N+   KKPW+LSFSFGRALQ S + AW GK ENV+  QA FL   KAN  A+LG ++G+ +   G  +SL V ++ Y
Sbjct:  250 ARATVEALQRTVPVAVPGVVFLSGGQSELDATRNLNAINKYPGKKPWALSFSFGRALQASAIAAWQGKPENVKAGQAEFLQLAKANGAASLGKFEGELKTAAG-QKSLFVANHAY 363

HSP 2 Score: 28.8758 bits (63), Expect = 1.168e-32
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 1

Query:    7 EGTLLKPNMVTPGSEAPK 60
            EGTLLKPNMVT G    K
Sbjct:  225 EGTLLKPNMVTCGQSCTK 242

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOC_PANTR (Fructose-bisphosphate aldolase C OS=Pan troglodytes GN=ALDOC PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.359e-32
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 2

Query:   77 IAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            IA  TV AL+RT+P AVP V FLSGGQSEEEA+ NLNA+N+    +PW+L+FS+GRALQ S L AW G+ +N + A   F+ R + N  A  G Y+G  + G  AA+SL++ ++ Y
Sbjct:  249 IAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLNAINRCPLPRPWALTFSYGRALQASALNAWRGQRDNAEAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIANHAY 364

HSP 2 Score: 36.5798 bits (83), Expect = 3.359e-32
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 1

Query:    7 EGTLLKPNMVTPGSEAP-KVTPE 72
            EGTLLKPNMVTPG   P K TPE
Sbjct:  225 EGTLLKPNMVTPGHACPIKYTPE 247

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOA_PANTR (Fructose-bisphosphate aldolase A OS=Pan troglodytes GN=ALDOA PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.418e-32
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = 2

Query:   59 KLHRRVIAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            K     IA  TV AL+RT+P AV  + FLSGGQSEEEA+ NLNA+N+    KPW+L+FS+GRALQ S LKAW GK+EN++ AQ  ++ R  ANS A  G Y    Q G  A+ESL V ++ Y
Sbjct:  243 KFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFVSNHAY 364

HSP 2 Score: 31.187 bits (69), Expect = 7.418e-32
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1

Query:    7 EGTLLKPNMVTPG 45
            EGTLLKPNMVTPG
Sbjct:  225 EGTLLKPNMVTPG 237

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOA_MOUSE (Fructose-bisphosphate aldolase A OS=Mus musculus GN=Aldoa PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.418e-32
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = 2

Query:   59 KLHRRVIAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            K     IA  TV AL+RT+P AV  V FLSGGQSEEEA+ NLNA+N+    KPW+L+FS+GRALQ S LKAW GK+EN++ AQ  ++ R  ANS A  G Y    Q G  A+ESL + ++ Y
Sbjct:  243 KFSNEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYTPSGQSGAAASESLFISNHAY 364

HSP 2 Score: 31.187 bits (69), Expect = 7.418e-32
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1

Query:    7 EGTLLKPNMVTPG 45
            EGTLLKPNMVTPG
Sbjct:  225 EGTLLKPNMVTPG 237

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOA_HUMAN (Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.418e-32
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = 2

Query:   59 KLHRRVIAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            K     IA  TV AL+RT+P AV  + FLSGGQSEEEA+ NLNA+N+    KPW+L+FS+GRALQ S LKAW GK+EN++ AQ  ++ R  ANS A  G Y    Q G  A+ESL V ++ Y
Sbjct:  243 KFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFVSNHAY 364

HSP 2 Score: 31.187 bits (69), Expect = 7.418e-32
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1

Query:    7 EGTLLKPNMVTPG 45
            EGTLLKPNMVTPG
Sbjct:  225 EGTLLKPNMVTPG 237

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOC_MACFA (Fructose-bisphosphate aldolase C OS=Macaca fascicularis GN=ALDOC PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 7.418e-32
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 2

Query:   77 IAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            IA  TV AL+RT+P AVP V FLSGGQSEEEA+ NLNA+N+    +PW+L+FS+GRALQ S L AW G+ +N   A   F+ R + N  A  G Y+G  + G  AA+SL++ ++ Y
Sbjct:  249 IAMATVTALRRTVPPAVPGVTFLSGGQSEEEASLNLNAINRCPLPRPWALTFSYGRALQASALNAWRGQRDNAGAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIANHAY 364

HSP 2 Score: 36.5798 bits (83), Expect = 7.418e-32
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 1

Query:    7 EGTLLKPNMVTPGSEAP-KVTPE 72
            EGTLLKPNMVTPG   P K TPE
Sbjct:  225 EGTLLKPNMVTPGHACPIKYTPE 247

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOA_RABIT (Fructose-bisphosphate aldolase A OS=Oryctolagus cuniculus GN=ALDOA PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 9.659e-32
Identity = 65/122 (53.28%), Postives = 82/122 (67.21%), Query Frame = 2

Query:   59 KLHRRVIAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            K     IA  TV AL+RT+P AV  V FLSGGQSEEEA+ NLNA+N+    KPW+L+FS+GRALQ S LKAW GK+EN++ AQ  ++ R  ANS A  G Y    Q G  A+ESL + ++ Y
Sbjct:  243 KYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 364

HSP 2 Score: 31.187 bits (69), Expect = 9.659e-32
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1

Query:    7 EGTLLKPNMVTPG 45
            EGTLLKPNMVTPG
Sbjct:  225 EGTLLKPNMVTPG 237

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALDOC_HUMAN (Fructose-bisphosphate aldolase C OS=Homo sapiens GN=ALDOC PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.659e-32
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 2

Query:   77 IAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            IA  TV AL+RT+P AVP V FLSGGQSEEEA+ NLNA+N+    +PW+L+FS+GRALQ S L AW G+ +N   A   F+ R + N  A  G Y+G  + G  AA+SL++ ++ Y
Sbjct:  249 IAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLNAINRCPLPRPWALTFSYGRALQASALNAWRGQRDNAGAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIANHAY 364

HSP 2 Score: 36.5798 bits (83), Expect = 9.659e-32
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 1

Query:    7 EGTLLKPNMVTPGSEAP-KVTPE 72
            EGTLLKPNMVTPG   P K TPE
Sbjct:  225 EGTLLKPNMVTPGHACPIKYTPE 247

[Close]

BLAST of DC900387 vs. ExPASy Swiss-Prot
Match: ALF_DICDI (Fructose-bisphosphate aldolase OS=Dictyostelium discoideum GN=fba PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.639e-31
Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 2

Query:   77 IAEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 424
            I + TVR LQRT+P A+  VVFLSGGQ+E EAT NLNAMN L  + PW+LSFS+GRALQ S +  W G+  NV+ A+  +L R K NS A LG Y G+   G  A+ESL+VKDYKY
Sbjct:  244 IGKFTVRTLQRTVPPALTGVVFLSGGQTEIEATANLNAMNVLPNR-PWALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTG-SASESLYVKDYKY 357

HSP 2 Score: 28.4906 bits (62), Expect = 1.639e-31
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 1

Query:    7 EGTLLKPNMVTPGSEAP-KVTPE 72
            EG LLKPNMV  G++ P K T E
Sbjct:  220 EGALLKPNMVVNGTDCPIKATSE 242

The following BLAST results are available for this feature:

BLAST of DC900387 vs. ExPASy Swiss-Prot

BLAST of DC900387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
ALDOA_RAT	8.965e-33	54.10	Fructose-bisphosphate aldolase A OS=Rattus norvegi...	[more]
ALF_ECHMU	1.168e-32	59.13	Fructose-bisphosphate aldolase OS=Echinococcus mul...	[more]
ALDOC_PANTR	3.359e-32	50.86	Fructose-bisphosphate aldolase C OS=Pan troglodyte...	[more]
ALDOA_PANTR	7.418e-32	53.28	Fructose-bisphosphate aldolase A OS=Pan troglodyte...	[more]
ALDOA_MOUSE	7.418e-32	53.28	Fructose-bisphosphate aldolase A OS=Mus musculus G...	[more]
ALDOA_HUMAN	7.418e-32	53.28	Fructose-bisphosphate aldolase A OS=Homo sapiens G...	[more]
ALDOC_MACFA	7.418e-32	50.86	Fructose-bisphosphate aldolase C OS=Macaca fascicu...	[more]
ALDOA_RABIT	9.659e-32	53.28	Fructose-bisphosphate aldolase A OS=Oryctolagus cu...	[more]
ALDOC_HUMAN	9.659e-32	50.86	Fructose-bisphosphate aldolase C OS=Homo sapiens G...	[more]
ALF_DICDI	1.639e-31	57.76	Fructose-bisphosphate aldolase OS=Dictyostelium di...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900387 VSS Citrus sinensis cDNA clone VS28960 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900387 ID=DC900387; Name=DC900387; organism=Citrus sinensis; type=EST; length=699bp
CCCTCTGAGGGTACCCTTTTGAAGCCCAACATGGTGACCCCTGGATCTGA
AGCTCCCAAAGTTACACCGGAGGGTGATTGCTGAACACACTGTCCGGGCC
CTGCAACGCACTATGCCTGCAGCAGTTCCTGCTGTTGTGTTCTTGTCTGG
TGGGCAGAGTGAGGAGGAGGCTACCCGCAACCTTAATGCCATGAACCAGC
TCAAGACGAAGAAGCCATGGTCACTTTCCTTTTCCTTTGGACGTGCACTT
CAGCAGAGCACTCTCAAGGCATGGGCTGGAAAGGAAGAGAATGTGCAGAA
GGCCCAGGCTGCTTTCCTTGTCAGGTGCAAGGCCAACTCTGAGGCTACCC
TCGGTACTTACAAGGGCGATGCCCAGCTTGGTGAAGGTGCCGCAGAGTCT
CTCCATGTCAAGGACTACAAATACTAAGCACAGTTGAAGCTTTGGGTGTT
GTGCTTTATGAACTTTATGAGAGTAAATGGCGGTATGAACATTAGGTTGG
CACATTCTCATTCATAGTTTTAGGGCTTTTTCATATTAGGTGGAGCAATA
AAAAGCTTGGGAACTTCGGTTTGAGTGGTTTTGATCAAAACTAAACTGAA
AACTGTTTATGCTTTTGTTTTTGTTTTTTTTTTCCTTTTCCCCTAATGGC
GCTAAATTTCTGTGATTTTGTCACATAATTGATAATGTTTTCTTGTGCT