DC900384

Overview
NameDC900384
Unique NameDC900384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig649 contig Csv1_Contig649:620..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.638e-37
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS--PQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEGCHGASLS 443
            INSL    TYA+RT+ F      L+PLAIELSLP    +       ++T        W+W+LAKA+V  ND+G HQL++HWL THA MEP++IAT+RQLS  HP+YKLL PH R T+ INALARQ+LINGGGI E +  P G H  ++S
Sbjct:  439 INSLDGIFTYATRTLLFLRDDDTLKPLAIELSLPHIEGNLTSAKSKVHTPASSGIESWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVYKLLQPHYRDTMTINALARQTLINGGGIFEQTVFP-GKHALAMS 586          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.445e-37
Identity = 87/154 (56.49%), Postives = 103/154 (66.88%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS---PQNKHIY--THGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEGCHGASLSXS 449
            INSLP  K YA+RT+ F    G L+PLAIELS P        P++  +   T G D+T   IW LAKAHV  ND+G HQLV+HWL THA MEP+ IAT+R LS +HPIYKLL+PH R T+ IN LARQSLIN  GIIE SF P G +   +S S
Sbjct:  446 INSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDST---IWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLP-GKYSIEMSSS 595          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.445e-37
Identity = 75/142 (52.82%), Postives = 95/142 (66.90%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGH----DATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            +  L ++  Y SRT+FF    G LRP+AIEL+ P +    Q + ++T G       T  W W+LAK HV S+D G HQLV+HWL TH  +EPY+IA +RQLS MHPIY+LLHPH R+T+EINA AR  LI   GIIE +FSP
Sbjct:  507 VRKLDNKTMYGSRTLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTPGSGYSGSVTGSWEWQLAKIHVLSHDTGYHQLVSHWLRTHCCVEPYVIAANRQLSQMHPIYRLLHPHFRFTMEINAQARGMLICADGIIEKTFSP 648          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.002e-36
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            IN LP  K YA+RT+ F      L+PLAIELSLP       N  +           IW LAKA+V  ND+  HQL++HWL THA MEP++IAT+R LS +HPIYKLL PH R T+ INALARQSLIN GG+IE SF P
Sbjct:  445 INDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGKGANSRVILPADGGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLP 582          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.497e-36
Identity = 74/133 (55.64%), Postives = 94/133 (70.68%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSP--QNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            KTYASRT+ F    G L+PLAIELSLP            +YT         IW+LAKA+V  ND+GVHQL++HWL THA +EP++IAT+RQLS +HPI+KLL+PH R T+ INALARQ LIN GG++E++  P
Sbjct:  449 KTYASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVEGSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINALARQILINAGGVLESTVFP 581          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 8.485e-36
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            IN L   KTYA+RT+ F  + G L+P+AIELSLP +    S     +     +     IW LAKA+V  ND+  HQL++HWL THA+MEP++IATHR LS +HPIYKLL PH R  + INALARQSLIN  GIIE +F P
Sbjct:  420 INQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTFLP 559          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            +N L     YA+RT+FF    G L PLAIELS P  +   +     +YT        W+W+LAKA+V  ND+G HQL++HWL THA MEP++IAT+RQLS  HP++KLL PH R T+ INALARQ+LIN GGI E +  P
Sbjct:  442 VNGLEGNFIYATRTLFFLRGDGTLAPLAIELSEPMIQGDVTAAKSTVYTPASTGVEAWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFP 581          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 73/133 (54.89%), Postives = 92/133 (69.17%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            KTYASRT+ F    G L+PL IELSLP            +YT G +     +W+LAKA V  ND+G HQL++HW+ THAS+EP++IAT+RQLS +HP++KLL PH R T+ INALARQ LINGGGI E +  P
Sbjct:  448 KTYASRTLLFLKDDGTLKPLVIELSLPHPNGDKFGAVSEVYTPG-EGVYDSLWQLAKAFVGVNDSGNHQLISHWMQTHASIEPFVIATNRQLSVLHPVFKLLEPHFRDTMNINALARQILINGGGIFEITVFP 579          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.565e-34
Identity = 78/147 (53.06%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSS---PQNKHIYTH------GHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            INSL D   YA+RT+ F    G L PLAIELSLP  +          +YT       G  A   W+W+LAKA+V  ND   HQL++HWL THA MEP++IAT+RQLS  HP++KLL PH R T+ INALARQ+LINGGGI E +  P
Sbjct:  439 INSLDDNFIYATRTLLFLRGDGTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFP 585          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 4.656e-34
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTH-WIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            +N+LP    YA+RT+FF    G L PLAIELS P  +   +     +YT     +   W+W+LAKA+V  ND+G HQLV+HWL THA MEP++I+T+R LS  HP++KLL PH R T+ INALARQ+LIN GGI E +  P
Sbjct:  437 VNNLPGNFIYATRTLFFLRGDGRLTPLAIELSEPIIQGGLTTAKSKVYTPVPSGSVEGWVWELAKAYVAVNDSGWHQLVSHWLNTHAVMEPFVISTNRHLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFP 577          
The following BLAST results are available for this feature:
BLAST of DC900384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX1_ORYSJ2.638e-3753.02Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXX_SOYBN3.445e-3756.49Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX22_HORVU3.445e-3752.82Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOXA_PHAVU1.002e-3655.80Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOXA_SOLLC6.497e-3655.64Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOYBN8.485e-3654.29Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX3_ORYSJ4.211e-3552.14Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_ARATH2.090e-3454.89Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX2_ORYSJ3.565e-3453.06Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_HORVU4.656e-3451.77Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionDC900384 VSS Citrus sinensis cDNA clone VS28959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900384 ID=DC900384; Name=DC900384; organism=Citrus sinensis; type=EST; length=458bp
AAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTTTTC
TTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATCCCT
TCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATGGGC
ATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTCTGT
TCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGACTCA
TGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTTCAA
TGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTAGAA
ATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAATTGA
GGCTTCTTTCAGCCCGGAAGGTTGCCATGGAGCTAGCTTGAGCNCAAGTT
GAGTGCTG
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