DC900384

Overview
NameDC900384
Unique NameDC900384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig649 contig Csv1_Contig649:620..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.942e-34
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 410
            KTYA+RT+FF    G L PLAIELS P  +         +Y   ++    +IW LAKA+V  ND+  HQLV+HWL THA +EP+++AT+RQLS +HP+YKLL PH R T+ IN+LAR+SL+N  GIIE +F
Sbjct:  335 KTYATRTIFFLKSDGTLAPLAIELSKPHPQGDEHGPVSEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVLATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTF 465          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.355e-33
Identity = 71/131 (54.20%), Postives = 88/131 (67.18%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 410
            K YA+RT+ F    G LRPLAIELSLP  +         ++    +     IW LAKA+V  ND+  HQLV+HWL THA +EP+IIAT+R LS +HPIYKLLHPH R T+ IN LAR SL+N GG+IE +F
Sbjct:  446 KAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTF 576          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.355e-33
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSP--QNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEAS 407
            K YASRT+ F    G L+PLAIELS P            +YT         IW+LAKA+V  ND GVHQL++HWL THA +EP++IAT+RQLS +HPI+KLL+PH R T+ INA ARQ L+N GG++E++
Sbjct:  450 KAYASRTLLFLQDNGSLKPLAIELSFPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDVGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINASARQLLVNAGGVLEST 579          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.311e-33
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 410
            KTYA+RT+FF    G L PLAIELS P  +         +Y    +    +IW LAKA+V  NDA  HQ+++HWL THA +EP++IAT+RQLS +HPIYKLL PH R T+ IN+LAR++L+N  GIIE +F
Sbjct:  441 KTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTF 571          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.148e-33
Identity = 70/131 (53.44%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 410
            K YA+RT+ F N    L+PLAIELSLP  +        ++Y    +     IW LAKA+V  ND+  HQLV+HWL THA +EP++IAT+R LS +HPIYKLL+PH R T+ IN+LAR SL+N GGIIE +F
Sbjct:  450 KAYATRTILFLNNNQNLKPLAIELSLPHPQGDEHGAVSYVYQPALEGVESSIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSCLHPIYKLLYPHYRDTMNINSLARLSLVNDGGIIEKTF 580          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.148e-33
Identity = 73/133 (54.89%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            K YA+RT+ F  + G L+P+AIELSLP      S     +     +     IW LAKA+V  ND+  HQL++HWL THA +EP+IIAT+R LS++HPIYKLL PH R T+ INALARQSLIN  GIIE SF P
Sbjct:  455 KAYATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLP 587          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 8.781e-33
Identity = 70/140 (50.00%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNK--HIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            INS  + KTYA+RT+      G L+PLAIELSLP  +         ++T         +W+LAKA+   ND+G HQL++HWL THA +EP+IIA++RQLS +HPI+KLLHPH R T+ INALAR  LIN  G++E +  P
Sbjct:  464 INST-NTKTYATRTLLLLQADGTLKPLAIELSLPHAQGESYGSVSKVFTPAEKGVEGSVWQLAKAYAAVNDSGYHQLISHWLQTHAVIEPFIIASNRQLSVVHPIHKLLHPHFRDTMNINALARHVLINSDGVLERTVFP 602          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.337e-32
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            IN L     YASRT+      G L+PLAIELSLP            +YT  +      IW+LAKA+   ND+  HQL++HWL THA +EP++IAT+RQLS +HP++KLL PH R T+ INALARQ+LIN  GI E +  P
Sbjct:  449 INKLDGNFIYASRTILLLKDDGTLKPLAIELSLPHPDGQQHGAVSKVYTPANTGVESQIWQLAKAYASVNDSAWHQLISHWLNTHAVIEPFVIATNRQLSVVHPVHKLLSPHYRDTMNINALARQTLINADGIFEKTVFP 588          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.818e-31
Identity = 69/140 (49.29%), Postives = 88/140 (62.86%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSP 416
            IN   + K YASRT+ F      L+PLAIELSLP            +YT         IW+ AKA+V  ND G+HQL++HWL THA +EP+++AT+R LS +HPI+KLLHPH R T+ INALAR++L   GG  E S  P
Sbjct:  442 INMSANTKAYASRTLLFLQDDRTLKPLAIELSLPHPDGDQFGTVSKVYTPADQGVEGSIWQFAKAYVAVNDMGIHQLISHWLNTHAVIEPFVVATNRHLSVLHPIHKLLHPHFRNTMNINALARETLTYDGG-FETSLFP 580          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.079e-30
Identity = 73/132 (55.30%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLP-PTRSS--PQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 410
            K YA+RTV F    G L+PLAIELS P P   S  P +K +Y    +     IW LAKA V  ND+  HQLV+HWL THA +EP+IIAT+R LS +HPI+KLL PH R T+ INALAR  L+N  GIIE++F
Sbjct:  454 KAYATRTVLFLQDNGTLKPLAIELSTPHPDGDSFGPVSK-VYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTF 584          
The following BLAST results are available for this feature:
BLAST of DC900384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOXB_PHAVU7.942e-3452.67Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX3_SOYBN1.355e-3354.20Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOLTU1.355e-3353.08Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX4_SOYBN2.311e-3352.67Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX3_PEA5.148e-3353.44Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_SOYBN5.148e-3354.89Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX5_ARATH8.781e-3350.00Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ORYSJ3.337e-3250.00Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOXB_SOLLC4.818e-3149.29Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_LENCU4.079e-3055.30Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900384 VSS Citrus sinensis cDNA clone VS28959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900384 ID=DC900384; Name=DC900384; organism=Citrus sinensis; type=EST; length=458bp
AAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTTTTC
TTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATCCCT
TCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATGGGC
ATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTCTGT
TCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGACTCA
TGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTTCAA
TGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTAGAA
ATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAATTGA
GGCTTCTTTCAGCCCGGAAGGTTGCCATGGAGCTAGCTTGAGCNCAAGTT
GAGTGCTG
back to top