DC900384

Overview
NameDC900384
Unique NameDC900384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig649 contig Csv1_Contig649:620..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.087e-30
Identity = 69/134 (51.49%), Postives = 87/134 (64.93%), Query Frame = 3
Query:   24 KTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYT-LEINALARQSLINGGGIIEASFSP 416
            K YA+RT+ F  + G L+P+AIELSLP            +     +     IW LAKA+V  ND+  HQL++HWL THA +EP++IAT+RQLS +HPI KLL PH R T + INALAR SLIN  G+IE SF P
Sbjct:  452 KAYATRTILFLKENGTLKPVAIELSLPHPDGDKSGFVSKVILPADEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVVHPINKLLAPHYRDTMMNINALARDSLINANGLIERSFLP 585          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+ I+L LP   SSP    + T         +W LAK  V S+D  VH+L +H L  H   E + +AT R L S+HP++KL+ PH+RYTLEIN  AR  L++  GI +   S  G
Sbjct:  310 GKLMPMVIQLHLPKIGSSPPPLFLPTD-----PPMVWLLAKCWVRSSDLQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+ I+L LP   SSP    + T         +W LAK  V S+D  VH+L +H L  H   E + +AT R L S+HP++KL+ PH+RYTLEIN  AR  L++  GI +   S  G
Sbjct:  310 GKLMPMVIQLHLPKIGSSPPPLFLPTD-----PPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE 401
            G L PLAI+LS  P   SP    I+       + W W LAK  V +++  VH+   H+L TH   E + +AT RQL   HPIYKLL PH RYTL++N +AR +L+N  G+++
Sbjct:  359 GALVPLAIQLSQTPGPDSP----IFL---PTDSEWDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFAMATLRQLPLCHPIYKLLLPHTRYTLQVNTIARATLLNPEGLVD 463          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+ I+L LP T S P    + T    A     W LAK  V S+D  +H+L +H L  H   E  ++AT R L S+HPI+KL+ PH+RYTLEIN  AR  L++  GI +   S  G
Sbjct:  309 GKLLPMVIQLQLPSTGSPPPPLFLPTDPPMA-----WLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGG 422          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.960e-17
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+ I+L LP T S P    + T    A     W LAK  V S+D  +H+L +H L  H   E  ++AT R L S+HPI+KL+ PH+RYTLEIN  AR  L++  GI +   S  G
Sbjct:  309 GKLLPMVIQLQLPRTGSPPPPLFLPTDPPMA-----WLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGG 422          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.172e-17
Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 3
Query:    3 INSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE 401
            INSL    T A   + + N  G+L PLAI+LS  P   SP    I+    D    W+  LAK  V +++  VH+   H+L TH   E + +AT RQL   HP+YKLL PH RYTL++N +AR +L+N  G+++
Sbjct:  339 INSLQQYVT-APLCLLWLNPQGVLLPLAIQLSQTPGPESP----IFLPT-DCELDWL--LAKTWVRNSEFLVHENNTHFLCTHLLCEAFSMATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVD 463          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 3
Query:   33 ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            A   +F+ NK G L P+AI+++  P   +P    I+T  H+   H  W +AK  +   ++  HQL  H L TH + E + ++T R L+S HP++KLL PH+   L I+ + R+ LI  GGI++ S S  G
Sbjct:  696 APLALFYVNKLGHLMPIAIQINQEPGPENP----IWTP-HEENEH-DWMMAKFWLGVAESNFHQLNTHLLRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLGG 819          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12L_RAT (Arachidonate 12-lipoxygenase, leukocyte-type OS=Rattus norvegicus GN=Alox12l PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.505e-16
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            G L P+AI+L LP T S+P    I+T          W LAK  V S+D  +H+L  H L  H   E + +AT R L S+HP++KLL PH+ YT+EIN  AR  LI+  G  + + S  G
Sbjct:  310 GQLLPIAIQLELPKTGSTPPP--IFTPSDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLMAELFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKAMSTGG 423          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.378e-16
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   63 AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEAS 407
            +G L P+AI+L   P   +P    I+    D    W W LAK  V +++  +H+ V H L  H   E + +AT RQL   HP++KLL PH+RYTL IN LAR+ L+  G +I+ S
Sbjct:  324 SGPLLPIAIQLKQTPGPDNP----IFLPSDDT---WDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLFKLLIPHIRYTLHINTLARELLVAPGKLIDKS 431          
The following BLAST results are available for this feature:
BLAST of DC900384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX2_PEA9.087e-3051.49Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX12_RABIT1.042e-1742.02Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX15_RABIT1.361e-1742.02Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]
LOXE3_HUMAN3.032e-1743.75Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOX15_PONAB3.032e-1742.86Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX15_HUMAN3.960e-1742.86Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LOXE3_MOUSE5.172e-1741.35Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
AOSL_PLEHO8.822e-1736.92Allene oxide synthase-lipoxygenase protein OS=Plex... [more]
LX12L_RAT1.505e-1642.02Arachidonate 12-lipoxygenase, leukocyte-type OS=Ra... [more]
LX15B_MOUSE4.378e-1640.87Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC900384 VSS Citrus sinensis cDNA clone VS28959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900384 ID=DC900384; Name=DC900384; organism=Citrus sinensis; type=EST; length=458bp
AAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTTTTC
TTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATCCCT
TCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATGGGC
ATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTCTGT
TCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGACTCA
TGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTTCAA
TGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTAGAA
ATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAATTGA
GGCTTCTTTCAGCCCGGAAGGTTGCCATGGAGCTAGCTTGAGCNCAAGTT
GAGTGCTG
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