DC900384

Overview
NameDC900384
Unique NameDC900384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig649 contig Csv1_Contig649:620..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.990e-14
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   45 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPEG 422
            + + N A  + P+AI+L+  P   +P    I+    DA   W+  LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HPI+KLL  H+R+T+ IN  AR+ LI   G+ + + +  G
Sbjct:  312 LLYKNLANKIVPIAIQLNQIPGDENP----IFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGG 430          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.129e-14
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   54 YNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGI 395
            +   G + P+AI+LS  P    P    I+     + + W W LAK  V   +   H+ + H L TH   E + +A  R L   HP+YKLL PH RYT++IN++ R  L+N GG+
Sbjct:  345 FGPEGKMMPIAIQLSQTPGPDCP----IFL---PSDSEWDWLLAKTWVRYAEFYSHEAIAHLLETHLIAEAFCLALLRNLPMCHPLYKLLIPHTRYTVQINSIGRAVLLNEGGL 451          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   45 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSL 377
            + + N A  + P+AI+L+  P   +P    I+       + + W LAK  V S+D  +HQ + H L TH   E + IA +RQL ++HP++KLL  H+R+T+ IN  AR+ L
Sbjct:  311 LLYKNLANKIVPIAIQLNQTPGEKNP----IFL---PTDSKYDWLLAKIWVRSSDFHIHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLFKLLVAHVRFTIAINTKAREQL 414          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.249e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3
Query:   33 ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFS 413
            A   +  +   G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S
Sbjct:  338 APMCLLHFGPDGNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMS 457          
BLAST of DC900384 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 3
Query:   66 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFS 413
            G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S
Sbjct:  349 GNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMS 457          
The following BLAST results are available for this feature:
BLAST of DC900384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX5_HUMAN6.990e-1438.10Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LX12B_HUMAN9.129e-1436.84Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LOX5_RAT3.469e-1336.94Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LX12B_MOUSE2.249e-1233.86Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX12B_RAT2.937e-1236.21Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900384 VSS Citrus sinensis cDNA clone VS28959 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900384 ID=DC900384; Name=DC900384; organism=Citrus sinensis; type=EST; length=458bp
AAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTTTTC
TTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATCCCT
TCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATGGGC
ATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTCTGT
TCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGACTCA
TGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTTCAA
TGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTAGAA
ATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAATTGA
GGCTTCTTTCAGCCCGGAAGGTTGCCATGGAGCTAGCTTGAGCNCAAGTT
GAGTGCTG
back to top