DC900382

Overview
NameDC900382
Unique NameDC900382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900382_ssr1 microsatellite DC900382_ssr1:1..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PLRG1_HUMAN (Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 42/154 (27.27%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  180 FVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +V  +A  P  +    GS D T  ++D+   K    L GH    R ++ S   P  LFS   D  V   D E   +     GH   V  +D  P    + T S D T ++WD+  +A++ +++ HT+ V  V  +    ++++ S D +I L++
Sbjct:  206 WVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSP-YLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWD 358          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PLRG1_BOVIN (Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 42/154 (27.27%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  180 FVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +V  +A  P  +    GS D T  ++D+   K    L GH    R ++ S   P  LFS   D  V   D E   +     GH   V  +D  P    + T S D T ++WD+  +A++ +++ HT+ V  V  +    ++++ S D +I L++
Sbjct:  205 WVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSP-YLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWD 357          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 3
Query:  210 GRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            GR +A G  D   +++ V +   +  L GH  P   + ++  +  ++ + S    + + D E   +   + GH   V S+D  P G  + +GS D  +KLWD+  +  +     HT  V  + F P G  + S SDD S+ L++
Sbjct:   33 GRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAE-ELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWD 175          

HSP 2 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 47/153 (30.72%), Postives = 69/153 (45.10%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            V SV ++     I  GS  G+  V+D+  AK L  L GH      L + P    V  S S DT++ + D   K       GH   V  +  SPDG  + + S D +VKLWDL     M  ++ H   V  + F P    + S S D+++  ++
Sbjct:   66 VESVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVA-SGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWD 217          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: GBB_LYMST (Guanine nucleotide-binding protein subunit beta OS=Lymnaea stagnalis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 39/158 (24.68%), Postives = 74/158 (46.84%), Query Frame = 3
Query:  180 FVLSVAWSPDGRRIACGSMDGTXSVFDVT----RAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +V++ A++P G  +ACG +D   S++ +       +    L GH        +  +D   + ++S D    + D E     T+ +GH   V+S+  SPD     +G+ D + KLWD+      Q+ + H   +  +++ P G    + SDD +  L++
Sbjct:  100 WVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--IDDNSIVTSSGDMSCALWDIETGQQTTSFTGHTGDVMSLSTSPDFRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLFD 255          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: GBB_DICDI (Guanine nucleotide-binding protein subunit beta OS=Dictyostelium discoideum GN=gpbA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 50/192 (26.04%), Postives = 83/192 (43.23%), Query Frame = 3
Query:   87 LWDTATWNLIATLSIXRPEGLKPTDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTR-------AKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +WD  T N +  + +                +V++ A+SP    +ACG +D   S++++          + L+   G+    R L     + R + ++S D    + D E  +  T  S H   V+SV  SPD     +G+ D T KLWDL     +Q+ T H   +  V + P G    + SDD S  L++
Sbjct:   88 VWDGLTTNKVHAIPLR-------------SSWVMTCAYSPTANFVACGGLDNICSIYNLRSREQPIRVCRELNSHTGYLSCCRFL-----NDRQIVTSSGDMTCILWDVENGTKITEFSDHNGDVMSVSVSPDKNYFISGACDATAKLWDLRSGKCVQTFTGHEADINAVQYFPNGLSFGTGSDDASCRLFD 261          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 620
            V SV +SP+G  +A  S D    ++     K+   L GH +    + +S    R L SAS D  + + D         + GH+ +V   + +P    I +GS D TVK+W++     +++++ H+D V  V F   G  +VS S D
Sbjct:   44 VSSVKFSPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLEISDVAWSSDSSR-LVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYD 188          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 620
            V SV +SP+G  +A  S D    ++     K+   L GH +    + +S    R L SAS D  + + D         + GH+ +V   + +P    I +GS D TVK+W++     +++++ H+D V  V F   G  +VS S D
Sbjct:   44 VSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSR-LVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYD 188          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 43/156 (27.56%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  174 KKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            +K V  V+ SP+ R IA  S DGT  ++     +    L GH+     + ++    + L SAS D  + I D E +     + GH  +V S+D +P G  + +GS D TV++W+L     ++ +  H++ +  VS    G    + S D    +++
Sbjct:   54 EKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWA-TGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWD 208          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: GBLP_NEUCR (Guanine nucleotide-binding protein subunit beta-like protein OS=Neurospora crassa GN=cpc-2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.038e-11
Identity = 45/138 (32.61%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  183 VLSVAWSPDGRRIACGSMDGTXSVFDVTR-AKFLHXLEGHFMPXRXLVYSPVDPR--VLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRP 587
            VLSV++S D R+I  GS D T  +++     KF    +GH      + +SP +P+  V+ S+  D  V + +     L T   GH  ++ +V  SPDG+   +G  D T  LWDLN    + S+ N  D++  + F P
Sbjct:  108 VLSVSFSADNRQIVSGSRDRTIKLWNTLGDCKFTITEKGHTEWVSCVRFSP-NPQNPVIVSSGWDKLVKVWELSSCKLQTDHIGHTGYINAVTISPDGSLCASGGKDGTTMLWDLNESKHLYSL-NANDEIHALVFSP 243          

HSP 2 Score: 21.9422 bits (45), Expect = 2.038e-11
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 2
Query:   92 GHSHLESDC 118
            GHSH+ SDC
Sbjct:   61 GHSHIVSDC 69          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TBL3_RAT (Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 43/155 (27.74%), Postives = 74/155 (47.74%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            K + S+A SP+ + +A GS D T  ++ + + + L    GH      + +SP D +VL +AS D  + +   +  S      GH   VL V     GA + +  SD  +KLW +     ++++  H D+VWG+    L    ++   D  I L++
Sbjct:  480 KDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWNVQFSPTD-QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWK 633          
The following BLAST results are available for this feature:
BLAST of DC900382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PLRG1_HUMAN1.519e-1127.27Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 P... [more]
PLRG1_BOVIN1.519e-1127.27Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=... [more]
KTNB1_XENTR1.519e-1127.08Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
GBB_LYMST1.519e-1124.68Guanine nucleotide-binding protein subunit beta OS... [more]
GBB_DICDI1.519e-1126.04Guanine nucleotide-binding protein subunit beta OS... [more]
WDR5B_PONAB1.984e-1129.45WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
WDR5B_HUMAN1.984e-1129.45WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
SWD3_SCHPO1.984e-1127.56Set1 complex component swd3 OS=Schizosaccharomyces... [more]
GBLP_NEUCR2.038e-1132.61Guanine nucleotide-binding protein subunit beta-li... [more]
TBL3_RAT2.591e-1127.74Transducin beta-like protein 3 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionDC900382 VSS Citrus sinensis cDNA clone VS28955 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900382 ID=DC900382; Name=DC900382; organism=Citrus sinensis; type=EST; length=905bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCTCGTGCCGAATTCGGCACGAGGNAAAGCTCTGGGACACAGC
CACTTGGAATCTGATTGCCACCCTGTCAATTNCTCGNCCAGAAGGACTGA
AGCCGACAGATAAAAGNAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGG
AGTCCTGATGGCAGACGAATTGCTTGTGGNTCAATGGATGGCACAATNTC
TGTTTTTGATGTTACCCGCGCCAAATTCCTGCATNATCTGGAAGGCCATT
TCATGCCTGNGCGTNCTCTTGTTTATTCCCCTGTTGATCCACGTGTNCTC
TTCTCTGCATCANATGATACTCATGTGCACATTNATGATGCTGAGGGTAA
AAGTCTGGNTACGGCAATGTCTGGTCATGCTAGNTGGGTGTTGAGTGTTG
ATGCAAGCCCCGATGGAGCAGCTATTACAACAGGCTCAAGTGATAGAACT
GTAAAGCTCTGGGATCTTAACATGAGAGCAGCCATGCAGTCAATGACTAA
CCACACAGACCAGGTCTGGGGAGTGTCATTTAGACCACTAGGAGGTCGGG
TTGTTAGCGTATCAGATGACAAAAGCATATCACTCTATGAATACTCCTGA
TGATAAGGCATTTTCAAAGTAAGACTATTGCAAAGTTTTTGTTTGTTATT
TGAAAATGCTAATGCTATTGTTGTTCTTAACTGCATTGGTCTGAAATTGT
ATGCCNTTCCAACCTANATTAGTCTTCNGCNTANCNTGNTTTTTTGANCA
TTTTCATCATCTNAAAAAANCCGACATTTGGNGGACTGATGTCTAGTAGT
TGNGCNCAAGTAGTTGGCATGGTGGTAAAGTGNCTTCCCCCTTTGCTTTG
GATGC
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