DC900382

Overview
NameDC900382
Unique NameDC900382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900382_ssr1 microsatellite DC900382_ssr1:1..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 47/158 (29.75%), Postives = 74/158 (46.84%), Query Frame = 3
Query:  210 GRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS***GIFKVRLLQ 683
            GR I  GS D T  V+       LH L+GH    R +  +     +L + S DT + + D E       + GH   V  V    DG  + +G  D TVK+W+ +    ++++T H ++V+ + F      V S S D SI +++++   G   V LLQ
Sbjct:  308 GRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAG---SILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALLQ 460          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PFS2_ASPFU (Polyadenylation factor subunit 2 OS=Aspergillus fumigatus GN=pfs2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 49/199 (24.62%), Postives = 83/199 (41.71%), Query Frame = 3
Query:  171 SKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLE-----------------------GHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYEYS***GIFKVRLLQSFCLL 698
            SKK +  V W+P+GRR+  G   G   +++ T   F   ++                        H    R L +SP D + L SAS DT + I D   ++  T ++GH   V S D  P    + +GS D  VK WD      + ++ +H + V    F  +   +++ S     +         +F +R+++  C+L
Sbjct:   27 SKKPITVVRWTPEGRRLLTGGHTGEFMLWNGTAFNFETVMDVRGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFL-SASDDTTLKIFDFTARTADTVLTGHNWDVKSCDWHPTKGLLVSGSKDHQVKFWDPRTARCLTTLHSHKNTVTTTRFSRVNSNLLATSSRDQTA--------RVFDLRMMRDICIL 216          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 48/181 (26.52%), Postives = 83/181 (45.86%), Query Frame = 3
Query:   84 KLWDTATWNLIATLSIXRPEGLKPTDKXSSKKFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKS 626
            KLWD  +   ++TL+    E             ++S+ ++  G R+  GS D T  ++DV   + +H L GH      + ++  D  ++ +AS D    + DAEG      + GH   VL V  +  G  I T S+D T +++  +    +  +  H  ++  V F   G RV++ S DK+
Sbjct:  202 KLWDVESGEEVSTLAGHFAE-------------IISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFN-WDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKT 368          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 37/155 (23.87%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            K + +V +SP G+ +   S D T  +++++       L GH +      +S  D + + +AS D  + I +     +   + GH  +V   + +P  + + +GS D +V++WD+     ++++  H+D V  VSF   G  + S S D  + +++
Sbjct:   80 KSISAVKFSPCGKFLGTSSADKTVKIWNMSDLSCERTLTGHKLGVNDFAWS-ADSKSIVTASDDKTLKIYEVPTVKMAKTLKGHTNYVFCCNFNPQSSLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWD 233          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLE--GHFMPXRXLVYSP-VDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM 545
            K VLSVA+SPD R+I  G  D    V++V + + +H L    H      + +SP +D  V+ S   D  V + D     L T + GH  +V SV  SPDG+   +   D   +LWDL    A+  M
Sbjct:  110 KDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  177 KFVLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLE--GHFMPXRXLVYSP-VDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSM 545
            K VLSVA+SPD R+I  G  D    V++V + + +H L    H      + +SP +D  V+ S   D  V + D     L T + GH  +V SV  SPDG+   +   D   +LWDL    A+  M
Sbjct:  110 KDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  156 TDKXSSKK-FVLSVAWSPDGRRI--ACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            TD+ S    + L  AW  D  ++  A G+ D T  ++  +++  L  LEGH      + + P     L SAS DT   + D           GH+  + S+   PDG+ +++G +D   ++WDL    ++  +  H  Q+  +++ P G ++ + S D ++ +++
Sbjct:  214 TDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGD-YLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWD 377          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: PRP46_CANGA (Pre-mRNA-splicing factor PRP46 OS=Candida glabrata GN=PRP46 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 44/145 (30.34%), Postives = 64/145 (44.14%), Query Frame = 3
Query:  207 DGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            D    A GS D T  ++++   K    L+ H M  R L  S   P  +FS S D  V   D E  +      GH   V +VD  P    + T   D  VK+WD+  R  + ++  H   +  V   P+  +V+S S D SI L++
Sbjct:  127 DNEWFATGSNDKTIKIWNLASGKLKVTLKAHDMTVRDLAISNRHP-YMFSVSEDKTVKCWDLEKNTAIRNYHGHLSGVHTVDIHPTVDVVVTAGRDSVVKVWDIRTRLPVMTLPGHKGPITKVRCLPVDPQVISSSVDASIRLWD 270          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3
Query:  282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            + L GH  P   +++ PV   V+ SAS D  + + D E       + GH   V  +     G  + + S+D T+KLWD      +++M  H   V  V+  P G  +VS S DK+I ++E
Sbjct:  102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220          
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3
Query:  282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641
            + L GH  P   +++ PV   V+ SAS D  + + D E       + GH   V  +     G  + + S+D T+KLWD      +++M  H   V  V+  P G  +VS S DK+I ++E
Sbjct:  102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220          
The following BLAST results are available for this feature:
BLAST of DC900382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SEL10_CAEEL4.419e-1129.75F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
PFS2_ASPFU4.419e-1124.62Polyadenylation factor subunit 2 OS=Aspergillus fu... [more]
WDR69_DANRE5.772e-1126.52WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
TG125_CAEBR5.772e-1123.87WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
GBLP_TRYBR5.772e-1134.92Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TRYBB5.772e-1134.92Guanine nucleotide-binding protein subunit beta-li... [more]
YIDC_SCHPO7.538e-1124.85Uncharacterized WD repeat-containing protein C227.... [more]
PRP46_CANGA7.538e-1130.34Pre-mRNA-splicing factor PRP46 OS=Candida glabrata... [more]
LIS1_RAT7.538e-1130.83Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PANTR7.538e-1130.83Platelet-activating factor acetylhydrolase IB subu... [more]

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Properties
Property NameValue
Genbank descriptionDC900382 VSS Citrus sinensis cDNA clone VS28955 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900382 ID=DC900382; Name=DC900382; organism=Citrus sinensis; type=EST; length=905bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCTCGTGCCGAATTCGGCACGAGGNAAAGCTCTGGGACACAGC
CACTTGGAATCTGATTGCCACCCTGTCAATTNCTCGNCCAGAAGGACTGA
AGCCGACAGATAAAAGNAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGG
AGTCCTGATGGCAGACGAATTGCTTGTGGNTCAATGGATGGCACAATNTC
TGTTTTTGATGTTACCCGCGCCAAATTCCTGCATNATCTGGAAGGCCATT
TCATGCCTGNGCGTNCTCTTGTTTATTCCCCTGTTGATCCACGTGTNCTC
TTCTCTGCATCANATGATACTCATGTGCACATTNATGATGCTGAGGGTAA
AAGTCTGGNTACGGCAATGTCTGGTCATGCTAGNTGGGTGTTGAGTGTTG
ATGCAAGCCCCGATGGAGCAGCTATTACAACAGGCTCAAGTGATAGAACT
GTAAAGCTCTGGGATCTTAACATGAGAGCAGCCATGCAGTCAATGACTAA
CCACACAGACCAGGTCTGGGGAGTGTCATTTAGACCACTAGGAGGTCGGG
TTGTTAGCGTATCAGATGACAAAAGCATATCACTCTATGAATACTCCTGA
TGATAAGGCATTTTCAAAGTAAGACTATTGCAAAGTTTTTGTTTGTTATT
TGAAAATGCTAATGCTATTGTTGTTCTTAACTGCATTGGTCTGAAATTGT
ATGCCNTTCCAACCTANATTAGTCTTCNGCNTANCNTGNTTTTTTGANCA
TTTTCATCATCTNAAAAAANCCGACATTTGGNGGACTGATGTCTAGTAGT
TGNGCNCAAGTAGTTGGCATGGTGGTAAAGTGNCTTCCCCCTTTGCTTTG
GATGC
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