DC900382
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11 Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3 Query: 282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 + L GH P +++ PV V+ SAS D + + D E + GH V + G + + S+D T+KLWD +++M H V V+ P G +VS S DK+I ++E Sbjct: 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11 Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3 Query: 282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 + L GH P +++ PV V+ SAS D + + D E + GH V + G + + S+D T+KLWD +++M H V V+ P G +VS S DK+I ++E Sbjct: 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: CIAO1_CHLRE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11 Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 3 Query: 183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKF--LHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDA-EGKSL--XTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLW--DLNMRAAMQSM----TNHTDQVWGVSFRPLG-GRVVSVSDDKSISLYE 641 + SVAWSP GR +A S D T +V++++ + + LEGH + + ++P D R++ + D V I ++ G+ GH+ V +V P G + + D T+KLW D + Q++ T H VW V + P+ R+ S SDD ++ L+E Sbjct: 68 IRSVAWSPTGRALATASFDATVAVWELSSGVWEQVAELEGHENEVKCVAWNP-DGRLIATCGRDRSVWIWESMPGREFECVDVKQGHSQDVKAVTWHPSGELLVSAGYDDTIKLWTYDGDEWGCAQTLGGTGTGHESTVWDVCWDPVSRARLASCSDDLTLRLWE 231
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 40/146 (27.40%), Postives = 69/146 (47.26%), Query Frame = 3 Query: 183 VLSVAWSPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDD 620 + SV +SP+G +A + D ++ K L GH + + +S R L SAS D + + D + GH+ +V D +P I +GS D +VK+W++ +++++ H+D + V F G +VS S D Sbjct: 42 ISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSR-LVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYD 186
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 41/147 (27.89%), Postives = 67/147 (45.58%), Query Frame = 3 Query: 201 SPDGRRIACGSMDGTXSVFDVTRAKFLHXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 SP A GS D T ++ R L GH + + P + L + S D V + A+ + +GH VLS+ SP+G + + D+ +KLWDL + + HTD + ++F P G + S S D S+ +++ Sbjct: 393 SPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHP-NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWD 538
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3 Query: 282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 + L GH P +++ PV V+ SAS D + + D E + GH V + G + + S+D T+KLWD +++M H V V+ P G +VS S DK+I ++E Sbjct: 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3 Query: 282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 + L GH P +++ PV V+ SAS D + + D E + GH V + G + + S+D T+KLWD +++M H V V+ P G +VS S DK+I ++E Sbjct: 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
BLAST of DC900382 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11 Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 3 Query: 282 HXLEGHFMPXRXLVYSPVDPRVLFSASXDTHVHIXDAEGKSLXTAMSGHAXWVLSVDASPDGAAITTGSSDRTVKLWDLNMRAAMQSMTNHTDQVWGVSFRPLGGRVVSVSDDKSISLYE 641 + L GH P +++ PV V+ SAS D + + D E + GH V + G + + S+D T+KLWD +++M H V V+ P G +VS S DK+I ++E Sbjct: 102 YALSGHRSPVTRVIFHPVFS-VIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220 The following BLAST results are available for this feature:
BLAST of DC900382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900382 ID=DC900382; Name=DC900382; organism=Citrus sinensis; type=EST; length=905bpback to top |