DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT3_ECHGR (Actin-3 (Fragment) OS=Echinococcus granulosus GN=ACTIII PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.111e-37
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 3
Query:  273 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            LKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAV 73          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: YGEC_SCHPO (Uncharacterized actin family protein C1347.12 OS=Schizosaccharomyces pombe GN=SPBC1347.12 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.256e-35
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D QP+  DNG+G +KAGFAGDD P+ +FP+ VGR +H  VM    QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE PL    N+EK+ +  +ET N PA+  ++Q V
Sbjct:    8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPV 144          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.025e-35
Identity = 69/134 (51.49%), Postives = 94/134 (70.15%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +VCDNGTG VK GFA  + P ++FPS+VGRP  R       +  KD  VGDEA   R +L + YP+++GIV NW+D E +W++TF+ +L+V P++  +LLTE P+NP ANREKM Q+MFE +   A Y+AIQAV
Sbjct:    8 IVCDNGTGFVKCGFARSNFPASIFPSMVGRPILRSEEKFDNVEIKDIMVGDEASKLRSMLQITYPLDNGIVRNWEDAEHVWNYTFFEKLKVDPKDCKILLTEPPMNPLANREKMVQVMFEKYGFKAAYIAIQAV 141          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_ARATH (Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.572e-35
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KD  VG+     R  L + YP+ +GIV NWDDME +W H FYNEL++ P +  +LLT+ PLNP  NREKM + MFE +N   +++ IQAV
Sbjct:    7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIETMFEKYNFAGVFIQIQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_XENTR (Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2B_XENLA (Actin-related protein 2-B OS=Xenopus laevis GN=actr2-B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2A_XENLA (Actin-related protein 2-A OS=Xenopus laevis GN=actr2-A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G+ KAG +G+  PR V  S+VG P+    + G  QK  +VG+EA  +  +L L YPIE G+++ W+DMEK+W H F  EL V   + PVL+TE  LNP+  REKM ++MFE+FN PA Y++ QAV
Sbjct:    8 DSPAVIFDNGSGLCKAGLSGEIGPRHVVSSVVGHPKFKTPLTGANQKKYFVGEEALHRHEVLQLHYPIERGLITGWEDMEKLWKHLFEWELGVKANDQPVLMTEPSLNPRETREKMAEVMFESFNVPAFYLSDQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2B_DANRE (Actin-related protein 2-B OS=Danio rerio GN=actr2b PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.023e-33
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +Y+AIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNINSRDCKILLTEPPMNPTKNREKIIEVMFETYQFTGVYIAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT2_MOUSE (Actin-related protein T2 OS=Mus musculus GN=Actrt2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.023e-33
Identity = 67/136 (49.26%), Postives = 91/136 (66.91%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G+ KAG +G+  PR V  S+VG P+      G  QK  +VG+EA  K+  L+L YPI+ G+V++WDD+EK+W H F  EL V P E PVL+TE  LNP+ NREK  ++MFETF  PA Y++ QAV
Sbjct:    8 DSPSVIFDNGSGLCKAGLSGEIGPRHVTSSVVGYPKFKAPPTGASQKKYFVGEEALYKQEALSLHYPIDRGLVTSWDDVEKLWRHLFEWELGVKPCERPVLVTEPSLNPRENREKTAEMMFETFEVPAFYLSDQAV 143          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACT3_ECHGR4.111e-3797.26Actin-3 (Fragment) OS=Echinococcus granulosus GN=A... [more]
YGEC_SCHPO2.256e-3550.36Uncharacterized actin family protein C1347.12 OS=S... [more]
ARP2_ACACA5.025e-3551.49Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ARP2_ARATH8.572e-3550.00Actin-related protein 2 OS=Arabidopsis thaliana GN... [more]
ARP2_XENTR4.703e-3348.59Actin-related protein 2 OS=Xenopus tropicalis GN=a... [more]
ARP2B_XENLA4.703e-3348.59Actin-related protein 2-B OS=Xenopus laevis GN=act... [more]
ARP2A_XENLA4.703e-3348.59Actin-related protein 2-A OS=Xenopus laevis GN=act... [more]
ACTT2_BOVIN4.703e-3347.06Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ARP2B_DANRE8.023e-3347.89Actin-related protein 2-B OS=Danio rerio GN=actr2b... [more]
ACTT2_MOUSE8.023e-3349.26Actin-related protein T2 OS=Mus musculus GN=Actrt2... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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