DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP1_YEAST (Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.048e-32
Identity = 64/135 (47.41%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   90 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            QP+V DNG+G++KAGF+G++ P+A+   +VG  ++  VM+   Q D ++G+ AQ  RG+L L+YPI+HG+V +WD ME IW +     L++    EHP+L+TEAP+NP  NRE+M Q++FETF+  A+YV+  AV
Sbjct:   13 QPVVIDNGSGIIKAGFSGEERPKALEYCLVGNTKYDKVMLEGLQGDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVLNEVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYVSNPAV 147          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRSCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_PONAB (Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_HUMAN (Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_CHICK (Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +  +   +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTKNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_BOVIN (Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +YVAIQAV
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2A_DANRE (Actin-related protein 2-A OS=Danio rerio GN=actr2a PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+ ++MFET+    +Y+AIQAV
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDSRNCKILLTEPPMNPTKNREKIIEVMFETYQFSGVYIAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.787e-32
Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   93 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            P+V DNGTG VK G+A D+ PR  FPSIVGRP  R       +  KD  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P+NP ANREKM + MFE +    +YVAIQAV
Sbjct:    5 PIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAV 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_CAEEL (Actin-related protein 2 OS=Caenorhabditis elegans GN=arx-2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +  + +V DNGTG VK G+AG + P  +FPS+VGRP  R T  +  +  KD  VG+E    R +L + YP+++GIV NWDDM  +W HTF  E L + P+E  +LLTE PLNP +NREKM Q+MFE +   ++YVA+QAV
Sbjct:    2 DSQGRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAV 143          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ARP1_YEAST1.048e-3247.41Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=... [more]
ARP2_RAT1.368e-3248.59Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_PONAB1.368e-3248.59Actin-related protein 2 OS=Pongo abelii GN=ACTR2 P... [more]
ARP2_MOUSE1.368e-3248.59Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]
ARP2_HUMAN1.368e-3248.59Actin-related protein 2 OS=Homo sapiens GN=ACTR2 P... [more]
ARP2_CHICK1.368e-3250.37Actin-related protein 2 OS=Gallus gallus GN=ACTR2 ... [more]
ARP2_BOVIN1.368e-3248.59Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=... [more]
ARP2A_DANRE1.368e-3247.89Actin-related protein 2-A OS=Danio rerio GN=actr2a... [more]
ARP2_SCHPO1.787e-3249.63Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ARP2_CAEEL3.982e-3249.30Actin-related protein 2 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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