DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_DROME (Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.581e-31
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D +    +VCDNGTG VK G+AG + P  +FPS+VGRP  R    +  +  KD  VGDEA   R +L + YP+E+G+V NWDDM  +W +TF   ++ + P    +LLTE P+NP  NREKM ++MFE +   + Y+AIQAV
Sbjct:    2 DSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_DICDI (Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.581e-31
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +V DNGTG VK GFAG + P A+FPS+VGRP  R    +  +  KD  VGDEA   R +L + YP+E+GI+ NWDD+  +W +    +L+V+ P E  +LLTE P+NP ANR+KM + MFE +   A+YVAIQAV
Sbjct:    7 IVMDNGTGFVKCGFAGANFPTAIFPSMVGRPILRSEEKVENVEIKDIMVGDEAAKLRSMLQITYPLENGIIRNWDDITHVWDYALKEKLKVSDPTECKILLTEPPMNPVANRQKMIECMFEKYGFQAVYVAIQAV 141          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSJ (Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-31
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   +      D  VG      R  L + YP+ +GIV +WDDM  IW H FY+EL+V P E  +LLT+ PLNP  NREKM + MFE +N   +++ +QAV
Sbjct:    7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSI (Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-31
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   +      D  VG      R  L + YP+ +GIV +WDDM  IW H FY+EL+V P E  +LLT+ PLNP  NREKM + MFE +N   +++ +QAV
Sbjct:    7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAV 140          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT2_MACFA (Actin-related protein T2 OS=Macaca fascicularis GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 63/136 (46.32%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G+ KAG +G+  PR +  SIVG  +      G  QK  +VG+EA  K   L L  PIE G+++ WDDME++W H F  EL V P + P+L TE  LNP+ NREKM ++MFE F  PA Y++ QAV
Sbjct:    8 DSPAVIFDNGSGLCKAGLSGEFGPRHIVSSIVGHLKFQAPSAGANQKKYFVGEEALYKLEALQLHSPIERGLITGWDDMERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEVMFENFGVPAFYLSDQAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   75 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVA 479
            D +  + +V DNGTG VK G+AG + P  +FPS+VGRP  R T  +  +  KD  VG+E    R +L + YP+++GIV NWDDM  +W HTF  E L + P+E  +LLTE PLNP +NREKM Q+MFE +   ++YVA
Sbjct:    2 DSQGRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMGHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVA 139          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT1_RAT (Actin-related protein T1 OS=Rattus norvegicus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G+ K G +G+  PR V  S+VG P+         +K  +VG+EAQ     L L YPIE G+V+ WDDMEK+W   F  EL V P E PV +TE  LNP+  REK T+IMFE FN PA+Y+   AV
Sbjct:    8 DNPAVIFDNGSGLCKVGISGEIVPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPRETREKTTEIMFEKFNVPALYLCNHAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D+  ++ DNG+G+ KAG +G+  PR V  S++G  +    +  + QK  +VG EA  K   L L YPIE G+V+ WDDMEK+W H F  EL V P + PVL+TE  LNP+  REK+ ++MFETF+ P  Y++  AV
Sbjct:    8 DVPAVIFDNGSGLCKAGLSGEIGPRHVISSVLGHCKFNVPLARLNQK-YFVGQEALYKYEALHLHYPIERGLVTGWDDMEKLWKHLFERELGVKPSQQPVLMTEPSLNPREIREKLAEMMFETFSVPGFYLSNHAV 142          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   84 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            D   ++ DNG+G+ K G +G+  PR V  S+VG P+         +K  +VG+EAQ     L L YPIE G+V+ WDDMEK+W   F  EL V P E PV +TE  LNP+  REK T+IMFE FN PA+Y+   AV
Sbjct:    8 DNPAVIFDNGSGLCKVGISGEIEPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPQETREKTTEIMFEKFNVPALYLCNHAV 143          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   93 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP---RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            P+V D GTG VK G AG++ P   FPSIVGRP         V    KD  +GDEA   R  L + YP+E+GI+ NW DME +W + F+ ++++ +     +LLTE P+NP  NREKM ++MFE ++   +YVAIQAV
Sbjct:    6 PIVLDQGTGFVKIGRAGENFPDYTFPSIVGRPILRAEERASVATPLKDIMIGDEASEVRSYLQISYPMENGIIKNWTDMELLWDYAFFEQMKLPSTSNGKILLTEPPMNPLKNREKMCEVMFEKYDFGGVYVAIQAV 142          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ARP2_DROME2.581e-3146.48Actin-related protein 2 OS=Drosophila melanogaster... [more]
ARP2_DICDI2.581e-3150.37Actin-related protein 2 OS=Dictyostelium discoideu... [more]
ARP2_ORYSJ3.371e-3148.51Actin-related protein 2 OS=Oryza sativa subsp. jap... [more]
ARP2_ORYSI3.371e-3148.51Actin-related protein 2 OS=Oryza sativa subsp. ind... [more]
ACTT2_MACFA1.673e-3046.32Actin-related protein T2 OS=Macaca fascicularis GN... [more]
ARP2_CAEBR3.727e-3048.55Actin-related protein 2 OS=Caenorhabditis briggsae... [more]
ACTT1_RAT1.416e-2947.06Actin-related protein T1 OS=Rattus norvegicus GN=A... [more]
ACTT1_HUMAN1.850e-2945.59Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ACTT1_MOUSE2.416e-2947.06Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ARP2_YEAST4.120e-2945.99Actin-related protein 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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