DC900357

Overview
NameDC900357
Unique NameDC900357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6192 contig Csv1_Contig6192:89..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7A_HUMAN (Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FE FN PAM++A Q+
Sbjct:   67 EVTKAVVVDLGTGYCKCGFAGLPRPTHKISTTVGKPYMETAKTGDNRKETFVGQELNNTNVHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFEAFNTPAMHIAYQS 202          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 65/164 (39.63%), Postives = 84/164 (51.22%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIV--------------GRPR----------------HTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            +V DNGTG  K GFAG+D+P  VFP+ +              GRP                 H     G    D ++GDEA +        L YPI HG + NWD ME+ W ++ +  LRV PE+H  LLTE PLNP  NRE   +I FE+FN   +Y+A+QAV
Sbjct:    8 VVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPGYGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEPEDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAV 171          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACT_CHERU (Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  324 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAV
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV 56          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7A_MOUSE (Actin-like protein 7A OS=Mus musculus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FETFN PAM++A Q+
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGHELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQS 207          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   99 VCDNGTGMVKAGFAGDDAPRAVFPSIVG-------------RPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            V DNGTG  K G+AG+  P+ + PS +              R  +     G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAV
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNAQALRWNNRVGGAGIDDLDFFIGDEALSPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 154          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7A_RAT (Actin-like protein 7A OS=Rattus norvegicus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   81 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FETFN PAM++A Q+
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGRELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQS 207          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.273e-26
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 3
Query:   96 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 488
            +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F+ E+++APEEH VL+++ PL+P  NREK  +++FETF  PAM++A Q+
Sbjct:   75 VVVDLGTGYCKCGFAGLPKPTHRISTTVGKPYMETAKTGDNRKETFVGHELINPEVRLKLINPLRHGIIVDWDTVQDIWEYLFHQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFKTPAMHIAYQS 205          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   99 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAV
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 146          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   99 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAV
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 146          
BLAST of DC900357 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   99 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAV 491
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FN P +Y+A+QAV
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAV 146          
The following BLAST results are available for this feature:
BLAST of DC900357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 444
Match NameE-valueIdentityDescription
ACL7A_HUMAN2.500e-2640.44Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE... [more]
ARP3_NEUCR3.265e-2639.63Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]
ACT_CHERU3.265e-2698.21Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1[more]
ACL7A_MOUSE3.265e-2641.18Actin-like protein 7A OS=Mus musculus GN=Actl7a PE... [more]
ARP3_CAEBR4.264e-2642.76Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ACL7A_RAT4.264e-2641.18Actin-like protein 7A OS=Rattus norvegicus GN=Actl... [more]
ACL7A_BOVIN7.273e-2641.22Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ARP3_RAT1.620e-2544.60Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]
ARP3_PONAB1.620e-2544.60Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE1.620e-2544.60Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900357 VSS Citrus sinensis cDNA clone VS28919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900357 ID=DC900357; Name=DC900357; organism=Citrus sinensis; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGCGCCTCGTAATTCGCTCGTTCTCATCT
CATAACCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGT
TTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATG
CTCCACGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGT
GTGATGGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCA
ATCGAAGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTG
TGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAAT
GAGCTTCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCC
TCTCAATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGA
CCTTTAATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTCTTTCCTTGT
ATGCGAGTGGTCGTCCACTGGTATTGTGTGACTCTGTGATGGGTGAG
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